Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04476 ATGCCTAATTTAAGATTTCTTCAGTTACATGTCCCCGAGGGTAAGAGATCAGGTACTGTGTACCATTGTACAGATCTCGAGGCATTTTCTGATGAATTGAGGTATTTTGAGTGGGATGGATTCCCTTTATCATCTCTTCCACCAAATTTTTGTGCTCAGCATCTTGTTGTGATTCGTATGCCACATAGCCATGTTAAAGAACTTTGGCAGGGGGTGCAGGATCTTGTGAATTTAGAGGCAATTGACCTACGCGAATGCAAACAGTTGGTAAAGCTTCCAGATTTGTCTAGGGCGTCAAAGCTTGTATTGGTGAATCTCTATGGTTGTGAAAGCTTGTCTGATGTTGATCCATCTATTTTGTCTCTCGAAGCACTTGAATCTCTGATACTAGATAACTGCATAGAATTGAAGAGTCTAACAAGTAAGAAGCATTCAAAATCACTAATGAAAATTAGTGTCAATGGTTGCATAGGGCTCGAGGAATATTCAGTGTCGTCCCACTTAATTGAAAGATTGGATTTAAGCAATACGGGAGTCAAAATATTGCACTCATCAATAGGTTGTTTAAGCAAGCTTGTGTGGCTGAATCTAGAAGGCTCAAAGCTTCAATATCTTCCAGATGAGTTATCGTGCCTGACATCTCTCGAGGAGCTTAGGATTTCTAACTGCCTACTAGTTGACAAAAAGAAGCTACATGTCTTGTGTGATCGCTTACAATCCTTAAAATTACTACATTTGAAGGATTGCTATAGGTTGTTTGAACTCCCTGACAACATCAATGCTTTATCATCATTACGTGAATTAAGGCTCGATGGAAGCAATGTTAAGAGTTTGCCTGCAAGGTTCACATGCCTTGTAAAGCTTGCAATTCTGTCTTTAGAGAATTGTAGGTTGCTTCAGTCTATCCATATGCTTCCACCATTCATCAAAGAACTTTATGCTGACAATTGTAGGTCATTGAAAACAGTATCTTGTTTCAAGACTTTTTTAATCCAGGTGCAAGCAGAGACCAAATACATTTCATTTAAGAATGGAAGAGATTTGAGTGAACATTCATGTCTCAGGATTGTGGAAGATGCTCTGTTTGATATGAAGATTGCTGCATTGCAGAATTTATTTAAAAGATGGGAACTTCCGATTGGTCAAGTAATTTATAGCAGTGTTAAGGTTTGTTTACCAGGAAGTAGAGTTCCAACGCACTTGGCACATCGAACCAAAGAGTCCTCCATTACCATTGAACTTCCTTCCCAACGTTCTGACCTTTTAGGCCTCGCCTACTCTGTGGTTCTTAACCCTCCATTGTTGGAGCAAGGTGCTAAAATCCATTGTCAATGCCGCTTGGTGGACGGTACAAAGGTGGGAAACGAGATTACATGGCATCAAGAAGCCATCTGGGGATTGGATTCGGATCATGTATTTATATGGTACGATTCATTCCATTCTAATAGAATTCTCCATTATTATAACCGACTTCGTTTTGAGTTCTTTGTTACAACACAGAATGGGGAACGTCATAACCTGATCAGTATCCAAGAGTGTGGGGTCCACCTAATACGTGTCTCACGGTCAGAGTTCTACAAATTCTTGAGAGAAACTAGAATGAACGTGGACTTGAAGTTGGAGTTGGGATTGATGTTAGACTTGGCGCATAGGTTTAAGGAAGTGGAATGGAGATTATACCTTGCATTCGAGATTGGATGTGAACTGGATCAATCACTAAAATTAGAGTTAGAATCTCGACGTCGACGGTTAATCAATGCTTTGCATTTGTAA 1773 0.3982 MPNLRFLQLHVPEGKRSGTVYHCTDLEAFSDELRYFEWDGFPLSSLPPNFCAQHLVVIRMPHSHVKELWQGVQDLVNLEAIDLRECKQLVKLPDLSRASKLVLVNLYGCESLSDVDPSILSLEALESLILDNCIELKSLTSKKHSKSLMKISVNGCIGLEEYSVSSHLIERLDLSNTGVKILHSSIGCLSKLVWLNLEGSKLQYLPDELSCLTSLEELRISNCLLVDKKKLHVLCDRLQSLKLLHLKDCYRLFELPDNINALSSLRELRLDGSNVKSLPARFTCLVKLAILSLENCRLLQSIHMLPPFIKELYADNCRSLKTVSCFKTFLIQVQAETKYISFKNGRDLSEHSCLRIVEDALFDMKIAALQNLFKRWELPIGQVIYSSVKVCLPGSRVPTHLAHRTKESSITIELPSQRSDLLGLAYSVVLNPPLLEQGAKIHCQCRLVDGTKVGNEITWHQEAIWGLDSDHVFIWYDSFHSNRILHYYNRLRFEFFVTTQNGERHNLISIQECGVHLIRVSRSEFYKFLRETRMNVDLKLELGLMLDLAHRFKEVEWRLYLAFEIGCELDQSLKLELESRRRRLINALHL. 591
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04476 590 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1 163 IPR044974 GO:0006952
Seca3g04476 590 Pfam C-JID domain 392 518 IPR045344 -
Seca3g04476 590 SMART LRR_typ_2 189 212 IPR003591 -
Seca3g04476 590 SMART LRR_typ_2 262 284 IPR003591 -
Seca3g04476 590 Pfam Leucine Rich Repeat 54 73 IPR011713 -
Seca3g04476 590 Gene3D Ribonuclease Inhibitor 164 338 IPR032675 -
Seca3g04476 590 Gene3D Ribonuclease Inhibitor 1 152 IPR032675 -
Seca3g04476 590 SUPERFAMILY L domain-like 23 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04476 Seca-Chr3 88033607 88038575 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04476 1 518 WRKY Transcription Factor Family AT5G45050 27.402 1.10e-24 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04476 - - lja:Lj0g3v0283809.3 499.204