Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04475 ATGTTTCAGCCAAACTTGATGGAAGGTGGTCAGTTTCACTCATTGGAGATGCCTCAAAACACTTCGGAGAGTGATATCCCTCGAGATGAGTTCGACAGTGGCACCAAGTCTTGCAGTGAAAACCATGAAGGTGCCTCTGGTGAAGACCAAGAACCACGCCCTAAAAAGAAGCGCTACCACCGCCACACCCAACACCAGATCCAAGAAATGGAAGCTTTTTTCAAGGAGTGTCCTCACCCAGATGACAAGCAAAGGAAGGAACTGAGCAGGGAGTTAGGGTTAGAGCCATTGCAGGTTAAGTTTTGGTTCCAGAACAAGCGCACCCAGATGAAGACCCAACATGAACGCCAAGAGAACACACAGCTTAGAACTGAAAATGATAAGCTTCGAGCAGATAACATGAGGTATAGGGAAGCTCTTAGCAATGCTTCATGTCCTAATTGTGGCGGACCAACCGCTATTGGAGAAATGTCATTTGATGAACATCACTTGAGGCTTGAAAATGCACGCCTTAGAGAAGAGATTGATAGAATTTCAGCAATTGCTGCCAAGTATGTAGGGAAGCCAGTGGTGAACTATTCAAATCTTTCACCTTCAATTCCTCCTCGTCCATTAGAACTTGGGGTTGGTGCTGGTTTTGGTGGCCAGCCAGGTGGGATTGGTGTGGATATGTTTGGAGGTGGAGATCTTCTGAGGTCAATTAGTGGACCCACTGAAGCTGACAAGCCAATAATAATAGAGCTAGCTGTTGCAGCTATGGAGGAGTTAATTGGGATGGCACAAATGGGTGAACCTCTTTGGTTAACAACCCTTGATGGTACTGCTACTGTGCTGAATGAGGATGAATACATCAGGTCCTTCCCTCGAGGAATTGGTCCCAAACCTGCTGGCTTCAAATGTGAAGCTTCACGAGAAACTGCTCTTGTTATCATGAACCATGTCAACCTCGTTGAGATTCTCATGGATGTGAACCAATGGTCCACAGTGTTCTCTGGAATAGTCTCAAGAGCCATGACTGTGGAAGTGCTATCAACTGGGGTGGCTGGGAATTACAACGGTGCCTTACAAGTGATGACAGCAGAATTACAAGTACCTTCACCTCTTGTGCCAACTCGTGAGAGTTATTTTGTAAGGTACTGTAAACAACATGCAGATGGGACTTGGGCAGTTGTGGATGTGTCCTTGGATAATTTGCGCCCTAGTCCTTCATCAAGATGTAGGAGAAGACCTTCTGGATGTTTAATTCAAGAAATGCCAAATGGCTACTCAAAGGTGACATGGGTTGAACATGTGGAAGTGGATGATAGAGGTGTTCATAATCTTTACAAGCAGCTTGTTAGTTCTGGACATGCATTTGGTGCAAAACGCTGGGTTGCAACCTTGGATAGACAATGTGAAAGGCTAGCTAGTGCCATGGCAACAAACATTCCTACTGTAGATGTTGGTGTGATTACAAACCAAGAAGGGAGGAAGAGTATGCTGAAACTAGCTGAGAGAATGGTTATAAGCTTTTGTGCTGGAGTGAGTGCTTCAACTGCACACACATGGACTACACTTTCTGGGACTGGAGCTGATGATGTAAGAGTGATGACCCGCAAGAGTGTAGATGACCCTGGAAGACCTCCTGGTATTGTTCTCAGTGCTGCTACTTCTTTTTGGCTTCCAGTTCCACCCAAACGTGTCTTTGACTTCCTCCGTGATGAGAACTCCAGAAATGAGTGGGATATTCTTTCCAATGGTGGAGTCGTCCAAGAAATGGCACACATTGCAAATGGAAGGGATACTGGAAACTGTGTTTCTCTACTTAGAGTAAATAGTGCCAATTCAAGCCAGAGCAACATGTTGATATTACAAGAGAGTTGCACCGATTCAACAGGCTCTTTTGTTATTTATGCTCCAGTGGATATTGTTGCCATGAATGTAGTTCTAAATGGAGGAGACCCAGACTATGTAGCCCTTCTTCCTTCAGGATTTGCTATCCTCCCAGATGGGACCACAACACATGGAAATGGCATTGGTGGTGAAGCTGGGCCTGGTGGATCTCTCTTGACTGTTGCATTTCAAATATTGGTTGATTCAGTTCCAACTGCTAAGCTTTCTCTTGGATCTGTTGCTACTGTTAATAATCTTATTGCTTGTACTGTTGAGAGAATCAAAGCTTCCTTATCAGGTGAAGCTGCTTGA 2184 0.4496 MFQPNLMEGGQFHSLEMPQNTSESDIPRDEFDSGTKSCSENHEGASGEDQEPRPKKKRYHRHTQHQIQEMEAFFKECPHPDDKQRKELSRELGLEPLQVKFWFQNKRTQMKTQHERQENTQLRTENDKLRADNMRYREALSNASCPNCGGPTAIGEMSFDEHHLRLENARLREEIDRISAIAAKYVGKPVVNYSNLSPSIPPRPLELGVGAGFGGQPGGIGVDMFGGGDLLRSISGPTEADKPIIIELAVAAMEELIGMAQMGEPLWLTTLDGTATVLNEDEYIRSFPRGIGPKPAGFKCEASRETALVIMNHVNLVEILMDVNQWSTVFSGIVSRAMTVEVLSTGVAGNYNGALQVMTAELQVPSPLVPTRESYFVRYCKQHADGTWAVVDVSLDNLRPSPSSRCRRRPSGCLIQEMPNGYSKVTWVEHVEVDDRGVHNLYKQLVSSGHAFGAKRWVATLDRQCERLASAMATNIPTVDVGVITNQEGRKSMLKLAERMVISFCAGVSASTAHTWTTLSGTGADDVRVMTRKSVDDPGRPPGIVLSAATSFWLPVPPKRVFDFLRDENSRNEWDILSNGGVVQEMAHIANGRDTGNCVSLLRVNSANSSQSNMLILQESCTDSTGSFVIYAPVDIVAMNVVLNGGDPDYVALLPSGFAILPDGTTTHGNGIGGEAGPGGSLLTVAFQILVDSVPTAKLSLGSVATVNNLIACTVERIKASLSGEAA. 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04475 727 SMART START_1 247 467 IPR002913 GO:0008289
Seca3g04475 727 MobiDBLite consensus disorder prediction 23 55 - -
Seca3g04475 727 Pfam START domain 248 467 IPR002913 GO:0008289
Seca3g04475 727 ProSitePatterns 'Homeobox' domain signature. 88 111 IPR017970 GO:0000981|GO:0006355
Seca3g04475 727 SUPERFAMILY Bet v1-like 486 719 - -
Seca3g04475 727 Coils Coil 112 139 - -
Seca3g04475 727 CDD homeodomain 56 114 IPR001356 GO:0003677
Seca3g04475 727 ProSiteProfiles START domain profile. 238 470 IPR002913 GO:0008289
Seca3g04475 727 SUPERFAMILY Homeodomain-like 42 113 IPR009057 -
Seca3g04475 727 SUPERFAMILY Bet v1-like 238 469 - -
Seca3g04475 727 Pfam Homeodomain 56 111 IPR001356 GO:0003677
Seca3g04475 727 CDD START_ArGLABRA2_like 242 466 - -
Seca3g04475 727 MobiDBLite consensus disorder prediction 1 65 - -
Seca3g04475 727 FunFam Homeobox-leucine zipper protein GLABRA 2 247 466 - -
Seca3g04475 727 Gene3D - 305 464 IPR023393 -
Seca3g04475 727 ProSiteProfiles 'Homeobox' domain profile. 53 113 IPR001356 GO:0003677
Seca3g04475 727 FunFam Homeobox-leucine zipper protein HDG1 41 129 - -
Seca3g04475 727 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 53 722 IPR042160 -
Seca3g04475 727 Gene3D - 41 130 - -
Seca3g04475 727 SMART HOX_1 54 117 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04475 Seca-Chr3 88021836 88028454 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04475 1 727 Homeobox Transcription Factor Family AT1G05230 77.853 0.0 1161
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca3g04475 START 6.6e-59 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04475 K09338 - gmx:100782260 1334.32