Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04467 ATGGCTGACATACAACGCTCCTCTGATGATGTTTCTACAGATGCCACAGAGCAATCCAGCCAAGCTTCAAAAGTTGAATTTTCTGAAGATGAGGAAATCCTTATTACCATGGTTTATAATCTCGTTGGGGAGAGGTGGTCTTTGATTGCTGGAAGAATTCCTGGAAGAACAGCAGAAGAAATAGAGGAGTATTGGACTTCAAGATACTCAACTAGCGAATGA 222 0.4144 MADIQRSSDDVSTDATEQSSQASKVEFSEDEEILITMVYNLVGERWSLIAGRIPGRTAEEIEEYWTSRYSTSE. 74
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04467 73 MobiDBLite consensus disorder prediction 1 26 - -
Seca3g04467 73 ProSiteProfiles Myb-like domain profile. 19 69 IPR001005 -
Seca3g04467 73 PANTHER TRANSCRIPTION FACTOR MYB51-LIKE ISOFORM X1 23 70 - -
Seca3g04467 73 CDD SANT 29 65 IPR001005 -
Seca3g04467 73 FunFam MYB-like transcription factor 26 68 - -
Seca3g04467 73 SUPERFAMILY Homeodomain-like 25 69 IPR009057 -
Seca3g04467 73 SMART sant 23 71 IPR001005 -
Seca3g04467 73 MobiDBLite consensus disorder prediction 1 23 - -
Seca3g04467 73 Gene3D - 26 68 - -
Seca3g04467 73 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 24 73 IPR017930 -
Seca3g04467 73 Pfam Myb-like DNA-binding domain 24 66 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04467 Seca-Chr3 87815988 87816615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04467 19 70 MYB Transcription Factor Family AT5G14750 44.231 9.25e-13 57.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g04467 Myb_DNA-binding 8.8e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04467 - - dzi:111287942 121.324