Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04456 ATGGATCCTTTATGCGAGTTATGTGGGGTTGTAAGAGCTGTCGTTTACTGCAAGCCTGATTCTGCTCGTCTCTGTTTGGATTGCGATGTATGTGTGCATGCTGCTAATGCTTTATCTTGTAGGCATCCTCGTTATCCCCTGTGTGGCAAGTGTAATTGCCAGCCAGCAATTGTCCACTGCTTGGACGATAAATTGTCTTTATGTCAATGTTGTGACTGGGACCAACATAATTGTTTGTTGTTGGGACACAAGCATCAAACTTTGAATTGCTATACGGGTTGTCCCTCTTTTACAGAGTTTCCGAGGTTATTGTCCTATGTGCTTGATGCTACTTCCTCAGATGGCTCAGGTCATGGTGGGGGATCATTTAATACATTGCAAAAAAATGATGGCTCATTTGATTTGGTGAGTAACAAGTTGAATGAAAAAGAACCATGGATGGAGCAAGCTTCCACTATTCCATCAAATCCAAATTACAAGAACATATCAAAGGAACATTCAAATGTTAATGATCTACTAATGCGTGATGAAGATGATCTCAGCATGGAGAGTATTCTAATTAACTTTGAAAATAGTGCTGAAATGTTTGATTGTTCTCAAATTGCCACAAAAAACCACTTTGATAATGGAGGAATGGGTTGTCAGTTAAAGGAGAACAACATATCAGTTTTAGAATCTAATGCTCTTATTAAGAGTTCCATGGAGGAGTCATCACCAATCCATCATGACTATGAGGCATTTCAGTCATTCAAGACTGGTGACTCAACTAGTGTAATGTTGGGTAACACAAATTGTGTACTTATGCATCCATGCCTCAATGACAACATCAACAAAGGATTTCCTCAGGGCCAAGACTATTCATTACCCAAAATCAATGGTGAAATTAATTCCACTGATTATCAAGATTGTGAATTACCACCAATGTTTATGGTAGGAGAATCCCCATGGGAATCAAGTTTGGAGGGTACATGCCCACAAGCCAGGGAGAAGGCTAAAATGAGATACAATGAGAAAAAGAAAACTCGAAGGTTTGGTAAGCAAATAAGGTATGAATCTCGCAAAGCAAGGGCTGATACAAGAAAACGCGTGAAAGGTAGATTTGTGAAAGTAAATGATGCAAGTGATTGTGATCCTCAAGGGGCAAGGGACTTCTAA 1155 0.3957 MDPLCELCGVVRAVVYCKPDSARLCLDCDVCVHAANALSCRHPRYPLCGKCNCQPAIVHCLDDKLSLCQCCDWDQHNCLLLGHKHQTLNCYTGCPSFTEFPRLLSYVLDATSSDGSGHGGGSFNTLQKNDGSFDLVSNKLNEKEPWMEQASTIPSNPNYKNISKEHSNVNDLLMRDEDDLSMESILINFENSAEMFDCSQIATKNHFDNGGMGCQLKENNISVLESNALIKSSMEESSPIHHDYEAFQSFKTGDSTSVMLGNTNCVLMHPCLNDNINKGFPQGQDYSLPKINGEINSTDYQDCELPPMFMVGESPWESSLEGTCPQAREKAKMRYNEKKKTRRFGKQIRYESRKARADTRKRVKGRFVKVNDASDCDPQGARDF. 385
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04456 384 SMART bboxneu5 1 47 IPR000315 GO:0008270
Seca3g04456 384 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 4 373 - -
Seca3g04456 384 Pfam CCT motif 328 370 IPR010402 GO:0005515
Seca3g04456 384 CDD Bbox1_BBX-like 4 47 - -
Seca3g04456 384 ProSiteProfiles CCT domain profile. 328 370 IPR010402 GO:0005515
Seca3g04456 384 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04456 Seca-Chr3 87642514 87645306 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04456 1 378 C2C2-CO-like Transcription Factor Family AT3G21880 39.031 1.31e-79 247
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-CO-like Seca3g04456 CCT 3.3e-16 CL0281
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04456 - - gmx:100804738 424.476