LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g04426	ATGGAATTGACAAGACCTGGTTATGCGGTTATTTATGTCATTCTCCTTTGCGCGTTAGCTCAAGGGGGCTCAGAGGGGAAGAGTGGGAAGGAAGAGGAGTTTTCTAGCTATTGTGGGGCTTTATCATCGTCCCTTCATTTACAAGGAAAACAGGTTATGCTGAATGGTTACTATTCTCTCATTTGCTTGATACAGGCAGAGAATGTTTGGAAACATTGCAGGAAAGAATTGATAGAGAGGAGCAATGATGGTAAAATTTTTGACTTGCATCAACTTGAAGGGAGAATTGACACTAGGTCTATTCTTTCAATAGAAAATAACATTCAAAAAACAACAAAGTCTCTACCTCCCCATGTGAAGAAAAAGGTTTTGGAGGGCTTAAGAACAAGCACTCCTCATGCTCCTGTTTCAGAAGAGAAGGCTAGTTCTAGATACTTGTTGACAAAGCATTCTAGTTCAACCTTGGGTTTGGAAAGTGGTCATCATGGAAGAACTTTGATTGCTGAGTCACCACAGAATGCAATGCCACCAAGCCCTGCTACTACTGTTCCATCTCCCGGGCATGCATCTGAATCACCAACACCAGCCAAATCTCCACCATCACCAACTCCTGGTCCCACTGCAGTGAATTTACCACTCCCTCCAGATATGTTTGTGCCATTTCCACCACCACCACCACCACGTTCACCTCGTTCTCCTCCTCAAAGTTTACGACCTATAATATATGCTCCTTATCCTTCACCTCATAACAATGATGACAGTACAAAGAATACAATTATTTTAGGTGCCATTTTATGTGGCATTATAATCTTGATAGGCTTATTCCTCTGTTTTCGTGAGGCTAGAAAAAACAAAGCTGACAAAGATGACAGGCCTTTACTAGTATTAACCTCAAGTGATTATTCTGGCGGTGCACAGAAGGTTGTTCGTTTGGGAAATGCTGATAAGGAAGAATATGGTATTGGCAATGAAAAGAACCCTTCTAATTTTAGAAACAAGTCCATTAAGGCTGGAGTTAACAATACCTCAATGGTTGAGACAAAATCATCACAAGGTATGGAACAAGTACCAGGACCTCCTAATGGAGGTCCAGCCCCTCCTCCACCTCCTGGTCCGCCGCCACCGCCACCTCCACGGGCTCCTCGTCCCCCACCACCTCCAAAAGCAGGTCATCCTCCACCTGCTCCTCCCAAGCCAACTGCTGGTAAAAACCAAGGACCACTTCGTTCTAAAGAGGGAGGTGCTAGTGAGGGTGATGCACCAAAACCTAAACTAAAGCCATTTTTCTGGGACAAGGTTGCTGCAAAACCTGATCAATCAATGGTGTGGCATGAGATCAGTGCAGGGTCATTCCAGTTCAATGAGGAAATGATGGAGTCTTTATTTGGCTGCGCCAACCAGAACAGAAATGAACGCAAAAAAGATTCACCATCTGTAGATACTTCAGTCCAGTATATTAAGATTATTGAACCTAAGAAAGCACAGAATTTGTCAATTCTTTTGCGAGCTCTGAATGTGACAACAGAAGAAGTCGTCGATGCTCTTAACGAAGGTAACGAGATTCCCATCGAGCTCATCCAGACTTTGTTGAAGATGGCACCAACACAAGAAGAGGAACTGAAGCTAAGATTATTCTCAGGAGAACTGACTCAACTAGGCCCAGCAGAGAGGTTTCTCAAAGTTTTAGTCGACATTCCATTCGCTTTCAAACGTCTCGAATGTCTAATGTTCATGTTTATCCTTCGAGAAGAGGCCTCAAGCATTAAGGAGTCCTTTCAAACATTAGAGGTTGCAAGCAACGAGCTGAGAAAAAGCAGGTTATTCTTAAAACTACTAGAAGCAGTTCTGAAAACTGGTAACCGCATGAATGATGGTACCTACCGTGGTGGTGCTCAAGCATTTAGGCTTGACACACTTCTGAAACTATCAGATGTGAAAGGAACAGATGGCAAGACCACACTGTTACACTTTGTGGTTCAGGAAATCATACGTTCAGAAGGGATAAGAGCTGTGAGAACTGAGAGAGCAAGCAGAAGCATTTCCAGCGTGGGAACAGAGGATCTTGATGATGGAACTGAAGAATCCGAAGAACACTATCGCAGCCTTGGCCTTCAGGTAGTTTCAGGCCTAAGCACTGAGCTTGGAGATGTCAAAAAAGCAGCACTCGTAGATGGCGATGCACTCAGCAATGCAGTGTCAAAACTTGGCCACTCATTGATACAGACACAGGAATTTCTTGACACTGACCTTAAGAACCTTGAAGAAGAGAGTGAGTTCCAACGTTGCACGGAGAGGTTTATGGGGAAAGCGAGAGAAGAAGTGACATGGCTGGTGGAAGAAGAGAAGAGGATAATGGCTCTGGTTAAGAGCACAGCAGATTACTTCCATGGAAAAGCAGGAAAAGATGAGGGGTTGCGTTTGTTTTTGATTGTGCGTGATTTCTTGATAATATTGGATAAAGTGTGTAAAGAGGTTAGGGACACTACCATGAAGTCAACAGTAAAGGTTTCTAGCAAGAAAGAGGCTCCATCACCACCAACTTCTCCAGATACTCGTCAACAATCATCACCACCGGCTTCTGATTTACATAGGATAGTGTTTCCAGCAATTGCAGGGCGGAGAGTGGATGATTCTAGCTCTGATGATGATGATGATGAGAAGCAGGACTTTTCTACATAG	2679	0.4378	MELTRPGYAVIYVILLCALAQGGSEGKSGKEEEFSSYCGALSSSLHLQGKQVMLNGYYSLICLIQAENVWKHCRKELIERSNDGKIFDLHQLEGRIDTRSILSIENNIQKTTKSLPPHVKKKVLEGLRTSTPHAPVSEEKASSRYLLTKHSSSTLGLESGHHGRTLIAESPQNAMPPSPATTVPSPGHASESPTPAKSPPSPTPGPTAVNLPLPPDMFVPFPPPPPPRSPRSPPQSLRPIIYAPYPSPHNNDDSTKNTIILGAILCGIIILIGLFLCFREARKNKADKDDRPLLVLTSSDYSGGAQKVVRLGNADKEEYGIGNEKNPSNFRNKSIKAGVNNTSMVETKSSQGMEQVPGPPNGGPAPPPPPGPPPPPPPRAPRPPPPPKAGHPPPAPPKPTAGKNQGPLRSKEGGASEGDAPKPKLKPFFWDKVAAKPDQSMVWHEISAGSFQFNEEMMESLFGCANQNRNERKKDSPSVDTSVQYIKIIEPKKAQNLSILLRALNVTTEEVVDALNEGNEIPIELIQTLLKMAPTQEEELKLRLFSGELTQLGPAERFLKVLVDIPFAFKRLECLMFMFILREEASSIKESFQTLEVASNELRKSRLFLKLLEAVLKTGNRMNDGTYRGGAQAFRLDTLLKLSDVKGTDGKTTLLHFVVQEIIRSEGIRAVRTERASRSISSVGTEDLDDGTEESEEHYRSLGLQVVSGLSTELGDVKKAALVDGDALSNAVSKLGHSLIQTQEFLDTDLKNLEEESEFQRCTERFMGKAREEVTWLVEEEKRIMALVKSTADYFHGKAGKDEGLRLFLIVRDFLIILDKVCKEVRDTTMKSTVKVSSKKEAPSPPTSPDTRQQSSPPASDLHRIVFPAIAGRRVDDSSSDDDDDEKQDFST.	893

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g04426	892	PANTHER	FORMIN-RELATED	246	866	IPR027643	GO:0003779\|GO:0030036\|GO:0045010\|GO:0051015
	Seca3g04426	892	MobiDBLite	consensus disorder prediction	832	892	-	-
	Seca3g04426	892	MobiDBLite	consensus disorder prediction	835	860	-	-
	Seca3g04426	892	MobiDBLite	consensus disorder prediction	345	424	-	-
	Seca3g04426	892	MobiDBLite	consensus disorder prediction	169	251	-	-
	Seca3g04426	892	Gene3D	Formin, FH2 domain	421	848	IPR042201	-
	Seca3g04426	892	MobiDBLite	consensus disorder prediction	193	241	-	-
	Seca3g04426	892	SMART	it6_source	415	833	IPR015425	-
	Seca3g04426	892	PRINTS	Proline rich extensin signature	192	208	-	-
	Seca3g04426	892	PRINTS	Proline rich extensin signature	360	385	-	-
	Seca3g04426	892	PRINTS	Proline rich extensin signature	178	190	-	-
	Seca3g04426	892	PRINTS	Proline rich extensin signature	228	249	-	-
	Seca3g04426	892	PRINTS	Proline rich extensin signature	213	225	-	-
	Seca3g04426	892	SUPERFAMILY	Formin homology 2 domain (FH2 domain)	428	831	-	-
	Seca3g04426	892	ProSiteProfiles	Formin homology-2 (FH2) domain profile.	415	844	IPR015425	-
	Seca3g04426	892	Pfam	Formin Homology 2 Domain	419	818	IPR015425	-
	Seca3g04426	892	MobiDBLite	consensus disorder prediction	359	401	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g04426	Seca-Chr3	86263782	86269758	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g04426	411	833	FH2 protein (formin) Gene Family	AT5G67470	48.364	4.73e-119	382

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g04426	-		-	psat:127086789	764.992