Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04415 ATGTATTCCTTTGCTCCTACTCATCCTGTTATTGTTTTCTCTACATCCTTTACAAACAACAATGAATCACAACTAGAAATGAACAGGCACCACGTTGTCTTATCTCGCAACATGAGAATAATTGTTCTCTTCCACATGTATGCTTGGTTGCTGTGCTTTTCTCAGCCGTGTTTAGCAGGAGATACTCTGAACGCCGGCCAGAATATAACAGGTAATGGAATCCTTGTTTCATCTGGGAATAAATTTGAACTAGGCTTCTTTTCTCCTCTTAACGTTACTGGCGGTAAAGGAAGGTACTTAGGGATGTGGTATCACAGGCAAGAGAAGTCAGAAGCTCTAACAGTGGTGTGGGTAGCAAACAGAGACAACCCTGTAGCTGTTGATTCCACTGGAGTTTTCCAAATAGCAGAGGATGGGAATCTGGTAGTGGTAGACACATATGGAAATAATTATTGGTCATCCAAAATGAAAGGCTCTTCATCCACAAACAGGACAGTGAAGCTCATGGATTCTGGGAACCTTGTGTTACTAGATGGAATGAAGAAAGTGTGGGAGAGCTTTGAACACCCAACTGACACATTCCTACCTGGCATGAAGATGGATAGGAATTTGAAGTTGACTAGTTGGAGAAACCTCACAGACCCAGGAAGTGGGAACTTCACATTTAAGATGGAACAAACAGGGGACAACCGTTTCATCATCTTAAACCATGACCAACTTTACTGGGAGAGTGAAGAACAAGGGATACTGAATTCAGTAGCAAAGTCTGATGATGACATGAGCACTGAAGTTTACATCTTGTTGACCAACTTCACCATTGCTCAATCAACGAACCTAATTCTCGAGAACTACGAGAACACGAGGCTGCTCCTCAATTATACAGGGATGATACAATTTATGGTGAGAGATAATTTCCAAGGCGATTCTGTTCGGTGGTTTCAGCCAAAAACAAAGTGCTTGATATATAATGATTGCGGGAACTTTACCAGCTGCAATGACAATGATAAGGTATGCAAATGTTTGCCTGGATTCACTGATGAAAATAATTACACGGGAGTTGGAGATTCTTCTCTAATATGTACCAGAAAATCAGCATCATGCGGAAAAGACACCACCAGGTTCTTAAACTTGGTCATGATGAAAATAAGAAGGCCTGATAAAAAAGTCACTGCAGAAAACGAAACAGATTGCCAATCTAAGTGCCTTGAGATGTGTCCCCAGTGCCAGGCTTATTCATACGCTAAACCTACCCTGCAGCGTGGTGCTTTCCCCACCACATGTTGGATCTGGACACAGGATTTAACTACTCTTAAAGAAGAGTATATTGGTGGTGATGGTAGGAAACTGTTTCTCCGGGTAGACGAATCAGACATAGCACCAACTCCTAGAACTTGTGAGCCTTGCGGCACAAACACAGTCCCTTATCCGCTGAGCACTGGACCCAGTTGTGGAGACCCTGCGTACTTCAAGTTCAGCTGCAGCAGCTCAACAGGTGAGCTTAGCTTCACCACCACCAACAACGAAAGTTACCGAGTTACTCTTGTAGATGCAGTTTCAAGAAACTTCATAATTCGGGTCACTCAAGATGAGGGTAATTCTTATAATCGTTACTGCGGTGAAAACAAGGATAAAAATCTGGAGGTTTCTTCACCGTTTGATATGACCAACGACACTGCGTGCTCTGACCTAGTACAAGTTAATTGGCAACTACCCTCAGAACCAACTTGTGCTCAATCCTCTGATTGCCAAGGTTGGAAACATTCAACTTGCAAAGGAAATAGGTGTCTTTGCAATGTAAACTATCATTGGCATGGCGATCTTTTAAGTTGTACCGAAAAAGCTATATCCACTCTTAATCCTACCTTAGAGGAGCCCACAAGTAAAGGAAACTCAAATTCTAAAAGCTCACTGTCTTTGATTCTTGGCATAACTCTTCCAGGCGTCGTTGTTCTGTCATGCCTAATTATTTTTGCTTATGTATGCAGACGAAAAATAGCTGCTAAGCTTAAGCAAGAAGGGGAAAGCATACAGAGAAAAAGAGGGCGCTATTATGATAGTGAAAGACAAGTGAAAGATTTGATAGACTTGGAGGGATTAGAAGAAAAAGATAATGAAGGCATAGAGGTCCCCTATTTTGATTTTGAGAGCATACTAGTAGCTACTGATTATTTCTCAGATGCAAACAAGCTTGGAAAAGGGGGTTATGGACCAGTTTACAAGGGTAGGCTTGAAGGAGGTCAAGATATTGCAGTGAAGAGGCTTTCAAGTGTTTCATCACAGGGCTTACAAGAATTCAAGAATGAGGTTGTTTTAATATCTAAACTTCAACATCGCAACCTTGTTAGACTGCGAGGCTATTGCATAAAAGGAGATGAAAAAATTCTACTTTATGAATATATGCCTAACAAGAGCTTAGACTCATTTATATTTGATCCCACAAAAAGTGTACTTTTGGATTGTCAAATGCGATTTGACATAATTCTCGGAATTGCTCGTGGACTACTTTATCTTCACCAAGACTCAAGACTCAGAGTAATTCACAGAGATTTGAAAACCAGTAACATTCTTCTAGATGAGGAGATGCAACCAAAAATTTCAGATTTTGGATTGGCCAGAATATTTGGAAGCAAAGAGACTGAGGCAAGCACCGAGAGGGTTGTAGGGACATATGGATACATGTCTCCCGAGTATGCATTGGATGGACATTTCTCAACCAAGTCAGATGTTTTCAGCTTTGGTGTAATGTTGCTAGAGATTATCAGTGGGAAAAAGAACACGGGATTCTATCAATCTAAAGCAATTTCAAGCCTTTTGGGTTATGCCTGGAGACTCTGGACAGAGAACAAATTGCTGGATTTAGTAGACTTATCTTTGCGTGAAACTTACAATGCAAACCAATTTATTAAGTGTGCACATATTGGGCTCTTATGTGTACAAGATGAACCAAATGATCGACCAAACATGTCAAATGTTGTGATAATGCTTGATAGTGAAACTGCAACCCTGCCAACCCCTAAACAACCAACCTTTTTTACGCGTAAAGACCTATCTAGCACAGCTTCTTCCAGTCTGCAGCTTGAGAGTAGCATTCAAGATGGTCGATAG 3105 0.4113 MYSFAPTHPVIVFSTSFTNNNESQLEMNRHHVVLSRNMRIIVLFHMYAWLLCFSQPCLAGDTLNAGQNITGNGILVSSGNKFELGFFSPLNVTGGKGRYLGMWYHRQEKSEALTVVWVANRDNPVAVDSTGVFQIAEDGNLVVVDTYGNNYWSSKMKGSSSTNRTVKLMDSGNLVLLDGMKKVWESFEHPTDTFLPGMKMDRNLKLTSWRNLTDPGSGNFTFKMEQTGDNRFIILNHDQLYWESEEQGILNSVAKSDDDMSTEVYILLTNFTIAQSTNLILENYENTRLLLNYTGMIQFMVRDNFQGDSVRWFQPKTKCLIYNDCGNFTSCNDNDKVCKCLPGFTDENNYTGVGDSSLICTRKSASCGKDTTRFLNLVMMKIRRPDKKVTAENETDCQSKCLEMCPQCQAYSYAKPTLQRGAFPTTCWIWTQDLTTLKEEYIGGDGRKLFLRVDESDIAPTPRTCEPCGTNTVPYPLSTGPSCGDPAYFKFSCSSSTGELSFTTTNNESYRVTLVDAVSRNFIIRVTQDEGNSYNRYCGENKDKNLEVSSPFDMTNDTACSDLVQVNWQLPSEPTCAQSSDCQGWKHSTCKGNRCLCNVNYHWHGDLLSCTEKAISTLNPTLEEPTSKGNSNSKSSLSLILGITLPGVVVLSCLIIFAYVCRRKIAAKLKQEGESIQRKRGRYYDSERQVKDLIDLEGLEEKDNEGIEVPYFDFESILVATDYFSDANKLGKGGYGPVYKGRLEGGQDIAVKRLSSVSSQGLQEFKNEVVLISKLQHRNLVRLRGYCIKGDEKILLYEYMPNKSLDSFIFDPTKSVLLDCQMRFDIILGIARGLLYLHQDSRLRVIHRDLKTSNILLDEEMQPKISDFGLARIFGSKETEASTERVVGTYGYMSPEYALDGHFSTKSDVFSFGVMLLEIISGKKNTGFYQSKAISSLLGYAWRLWTENKLLDLVDLSLRETYNANQFIKCAHIGLLCVQDEPNDRPNMSNVVIMLDSETATLPTPKQPTFFTRKDLSSTASSSLQLESSIQDGR. 1035
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04415 1034 SMART serkin_6 724 968 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04415 1034 Gene3D - 56 189 IPR036426 -
Seca3g04415 1034 ProSiteProfiles Protein kinase domain profile. 724 1010 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04415 1034 FunFam Receptor-like serine/threonine-protein kinase SD1-8 55 187 - -
Seca3g04415 1034 ProSitePatterns Serine/Threonine protein kinases active-site signature. 845 857 IPR008271 GO:0004672|GO:0006468
Seca3g04415 1034 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase At4g03230 689 799 - -
Seca3g04415 1034 Pfam D-mannose binding lectin 114 208 IPR001480 -
Seca3g04415 1034 Gene3D Phosphorylase Kinase; domain 1 691 799 - -
Seca3g04415 1034 Pfam S-locus glycoprotein domain 277 346 IPR000858 GO:0048544
Seca3g04415 1034 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 151 1017 - -
Seca3g04415 1034 CDD STKc_IRAK 730 996 - -
Seca3g04415 1034 Gene3D Transferase(Phosphotransferase) domain 1 800 1007 - -
Seca3g04415 1034 CDD B_lectin 69 190 IPR001480 -
Seca3g04415 1034 ProSiteProfiles PAN/Apple domain profile. 367 454 IPR003609 -
Seca3g04415 1034 ProSiteProfiles Bulb-type lectin domain profile. 60 189 IPR001480 -
Seca3g04415 1034 SUPERFAMILY Protein kinase-like (PK-like) 706 1015 IPR011009 -
Seca3g04415 1034 FunFam G-type lectin S-receptor-like serine/threonine-protein kinase 800 1003 - -
Seca3g04415 1034 SUPERFAMILY alpha-D-mannose-specific plant lectins 115 215 IPR036426 -
Seca3g04415 1034 SMART blect_4 66 190 IPR001480 -
Seca3g04415 1034 CDD PAN_AP_plant 366 453 - -
Seca3g04415 1034 Pfam Protein tyrosine and serine/threonine kinase 728 993 IPR001245 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04415 Seca-Chr3 86054445 86059615 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04415 620 1013 Receptor kinase-like Gene Family AT4G05200 49.239 1.36e-126 399
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Seca3g04415 PK_Tyr_Ser-Thr 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04415 - - tpra:123882048 1290.79