Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04414 ATGAAGAAGTGTGAGCTGTGCAAGGTTCCGGCAAGGACGTTCTGTGAGTCAGACCAGGCTAGCTTGTGCTGGGACTGCGATGCCAAGGTTCACGGTGCCAACTTCTTGGTTGCAAGGCACTCCAGGACCCTCCTCTGCGACACTTGCCGTTCCCCAACGCCGTGGAAAGCCTCCGGCGCCAGGCTCGGCAACACCGTCTCTGTCTGTGACCGTTGCGCCGCTGAAGAAGAAGAAGTGGAAGAGAGCGAAGGAGGCAATGACGATGAGATGGACACGGAGGACGACGACGATTTTGACGGCGATAATCAGGTCGTGCCTTGGTCCTCCTCGACGCCGCCTCCGCCGGCGGCGAGTTCTTCCGGCAGCGAATGGTCGTCGGTTAGCAGGTGCAACGACAACGGTTACAACAACAACGCAGTAACGACAATAGCTTCGCTGAAACGACAGCGTGAGGATGATGCTTCAGATCGAGGATCCGAACGGTTCAACATCTCAACGGAGGTGTGGTGGGAGTTGAGCGAGGAGGTGGCGTGTGGCGGAGAACCACCGCCGAAGGAGTGA 561 0.5829 MKKCELCKVPARTFCESDQASLCWDCDAKVHGANFLVARHSRTLLCDTCRSPTPWKASGARLGNTVSVCDRCAAEEEEVEESEGGNDDEMDTEDDDDFDGDNQVVPWSSSTPPPPAASSSGSEWSSVSRCNDNGYNNNAVTTIASLKRQREDDASDRGSERFNISTEVWWELSEEVACGGEPPPKE. 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04414 186 MobiDBLite consensus disorder prediction 146 160 - -
Seca3g04414 186 CDD Bbox1_BBX-like 3 45 - -
Seca3g04414 186 MobiDBLite consensus disorder prediction 114 145 - -
Seca3g04414 186 PANTHER ZINC FINGER PROTEIN CONSTANS-LIKE 10 3 149 - -
Seca3g04414 186 MobiDBLite consensus disorder prediction 76 162 - -
Seca3g04414 186 ProSiteProfiles Zinc finger B-box type profile. 1 45 IPR000315 GO:0008270
Seca3g04414 186 Pfam B-box zinc finger 2 42 IPR000315 GO:0008270
Seca3g04414 186 SMART bboxneu5 1 45 IPR000315 GO:0008270
Seca3g04414 186 MobiDBLite consensus disorder prediction 76 101 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04414 Seca-Chr3 86014646 86015497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04414 2 95 C2C2-CO-like Transcription Factor Family AT5G54470 60.638 4.56e-36 123
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Seca3g04414 zf-B_box 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04414 - - gmx:100782655 181.8