Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04405 CTCTCTTCATCTCTCTCACTCTCATATATACAGCTAGATTTAACACATCGATCAACAGAACAGAAATTAACATATATAATTAAGACACACACACACACCAGCGCTCGCTCTGAGAAAGATATGGTTAGAACCCCTCTCTGCGACAAAAGTGGACTGAAGAAAGGAACATGGACTCCAGAGGAAGACCGAAAGTTAATTGCTTACGTTACTAGGTACGGCCACTGGAATTGGCGCCAACTGCCCAAGTTTGCAGGTCTTGCTAGGTGTGGAAAGAGCTGCAGATTGAGGTGGCTGAATTATTTAAGGCCAGGCATCAAAAGAGGCAACTATACTCGTGAAGAAGAAGACACCATTGTCAAACTGCACGCATTGCTTGGAAATAGATGGTCAACAATTGCTTCTTACTTACCTGGAAGATCAGACAACGAGATAAAAAACCACTGGAACGCCCATCTTAAGAAGCGGTTTCAAGTTCAACACAATTCAGTAACAAATGAAAAAGATGAAAACTCCAACTCAAACCATCACTCCCCAGTTGAATCCACCAACCAAGAGAAGGACTCTGTGGAAATTGCTGGCCCTTCCCAAGATACTAATAATTACCAGACCCCTGATCATGCTTCTCCATCGTTGAATGATTTTTTCTTCACAACAACGGAACAAATTGCACCATTCAATGATGACGAGAATTTATCGCTTCTTGATGACTTTGCTAACTTCAATTTTGTGGACTCACACAATGATCCTATAAGCGCATATTCTTGGACAGAACTCAATGTGCCTGACATTTCCTACTTCCCAGGAGAATTACTGGCACCTTTCGTTACTGAACCCGAATCTTTCTATCCAACTTTTGATACACTGCTTTGGGGTATGTCATAA 882 0.4184 LSSSLSLSYIQLDLTHRSTEQKLTYIIKTHTHTSARSEKDMVRTPLCDKSGLKKGTWTPEEDRKLIAYVTRYGHWNWRQLPKFAGLARCGKSCRLRWLNYLRPGIKRGNYTREEEDTIVKLHALLGNRWSTIASYLPGRSDNEIKNHWNAHLKKRFQVQHNSVTNEKDENSNSNHHSPVESTNQEKDSVEIAGPSQDTNNYQTPDHASPSLNDFFFTTTEQIAPFNDDENLSLLDDFANFNFVDSHNDPISAYSWTELNVPDISYFPGELLAPFVTEPESFYPTFDTLLWGMS. 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04405 293 Gene3D - 47 106 - -
Seca3g04405 293 Pfam Myb-like DNA-binding domain 107 151 IPR001005 -
Seca3g04405 293 Pfam Myb-like DNA-binding domain 54 101 IPR001005 -
Seca3g04405 293 CDD SANT 56 101 IPR001005 -
Seca3g04405 293 Gene3D - 108 187 - -
Seca3g04405 293 ProSiteProfiles Myb-like domain profile. 102 152 IPR001005 -
Seca3g04405 293 SUPERFAMILY Homeodomain-like 51 148 IPR009057 -
Seca3g04405 293 FunFam MYB-related transcription factor 53 106 - -
Seca3g04405 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 156 IPR017930 -
Seca3g04405 293 SMART sant 106 154 IPR001005 -
Seca3g04405 293 SMART sant 53 103 IPR001005 -
Seca3g04405 293 MobiDBLite consensus disorder prediction 163 206 - -
Seca3g04405 293 ProSiteProfiles Myb-like domain profile. 49 101 IPR001005 -
Seca3g04405 293 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 41 208 - -
Seca3g04405 293 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 49 101 IPR017930 -
Seca3g04405 293 CDD SANT 109 152 IPR001005 -
Seca3g04405 293 MobiDBLite consensus disorder prediction 175 206 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04405 Seca-Chr3 85845424 85846632 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04405 41 228 MYB Transcription Factor Family AT2G31180 52.632 1.56e-60 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g04405 Myb_DNA-binding 5.1e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04405 K09422 - gmx:106799185 283.493