Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04399 ATGATGAGAACCCCCTGCTGTGACAAAAATGGACTGAAGAAAGGAACATGGGCACCAGAGGAGGACAAGAAGTTGGTTGATTATGTTACCAGATATGGCCACTGGAATTGGCGCCTACTACCCAAGTTTGCAGGACTTGCGAGATGCGGAAAGAGTTGCAGACTTAGGTGGCTGAATTACCTAAGGCCAAATGTTAAAAGAGGGAACTATACTCAACAAGAGGAGGAAACTATTATCAAGCTCCACCAACTATTGGGTAACAGATGGTCTGCCATTGCTGCTGAGATGCCAGGAAGAAGTGACAATGAAATAAAAAACTACTGGCACACCAACCTCAAGAAGCGATTTCAACACAACTCAGTCACAGAAGCTCAAGACTCTGATCAGTCAAAGGATGATGATGACTCCTCAACTGAAACTGCAAACAATTACGTGACTGCAGTTAATACCACCCAAATCGCCGAGACTTCCTCATTTTCCCACCATTCATCCTCCTCTGCAAGCACAGAGTACTGCAACACTACTACCACTACCAGCAATGAAAATCTGACTCTGGAAGATGAATTTGCCTTTCTAGATGCAGACAATTTATTAGATCCCGTGAGTGAAAGCTTCTGGTTAGAGCCATATATGTTTGACATTAGCTATGTCCCAAGTGAGCCTGAGGATTTTAGCCCAATCTTTGATGCGGAACTTTGGAGTCATATATGA 711 0.4374 MMRTPCCDKNGLKKGTWAPEEDKKLVDYVTRYGHWNWRLLPKFAGLARCGKSCRLRWLNYLRPNVKRGNYTQQEEETIIKLHQLLGNRWSAIAAEMPGRSDNEIKNYWHTNLKKRFQHNSVTEAQDSDQSKDDDDSSTETANNYVTAVNTTQIAETSSFSHHSSSSASTEYCNTTTTTSNENLTLEDEFAFLDADNLLDPVSESFWLEPYMFDISYVPSEPEDFSPIFDAELWSHI. 237
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04399 236 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Seca3g04399 236 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca3g04399 236 CDD SANT 69 112 IPR001005 -
Seca3g04399 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca3g04399 236 CDD SANT 16 61 IPR001005 -
Seca3g04399 236 FunFam Transcription factor RAX3 7 67 - -
Seca3g04399 236 SMART sant 13 63 IPR001005 -
Seca3g04399 236 SMART sant 66 114 IPR001005 -
Seca3g04399 236 Gene3D - 13 66 - -
Seca3g04399 236 MobiDBLite consensus disorder prediction 119 139 - -
Seca3g04399 236 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca3g04399 236 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Seca3g04399 236 MobiDBLite consensus disorder prediction 156 175 - -
Seca3g04399 236 Gene3D - 69 142 - -
Seca3g04399 236 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 182 - -
Seca3g04399 236 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca3g04399 236 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04399 Seca-Chr3 85691049 85693435 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04399 1 220 MYB Transcription Factor Family AT1G06180 46.818 1.88e-66 204
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g04399 Myb_DNA-binding 1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04399 K09422 - gmx:100778518 313.538