Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04396 ATGCACAAAAAGCTGGGCAATAGATGGTCTGCCATTGCGGCTGAATTGCCTGGAAGAACAGATAATGAAGTAAAGAACCATTGGCATACCACACTCAAGAAGAGAGTTGCAAATGAGAAAGCCAACAAATCCTCCAAATCAAAAGATATTGAATCCACTCAAGGGAGGGACTCAATGACCAACAATGATGCTGTTCCTGTTTTTCAAGTTACTCTTCCAACTACTTCCTATATGTCAGAAATTACTGGTCCATTATCCCCATTTTCATCCTCCAGCGAGTTTTCTTCCGTAACTTCAGATCACACTTCTGCTGCCAGTAATGGAAATTTGTTGCTTGAAGATGATGACTTCAGTTTTCTGGATGCATATGCAGAGACTGTGGATATTGAAACTTTCTGGACAGAGTCATTACTAGCTGATATTTCATCCTCTACACCAAGTGAAACAGTGCTAGACTATACTAATTGTGCTTTTCAAAATCAAGATGATACCCAGAATAACCTTGATGGTAGTTTATTTTCACCGCATCAATCGTCCAGTGAAAGTTTGGTTGTGGAGAATGAGTTTGGAAGTATTCCAACAATTGATAATTTTTGGGGACAGCAATATGTGGCCGACATTTGCCACGTTCCAAGTGAAATGCTGACACCCTTTGTGGCTGAATCTGAATATTTTTCTACAGTATATGATGCTGAACTTTGGAGTCAAAATAATTTGTATGATCAACATGTTAGCTTATTCCAATGA 747 0.3896 MHKKLGNRWSAIAAELPGRTDNEVKNHWHTTLKKRVANEKANKSSKSKDIESTQGRDSMTNNDAVPVFQVTLPTTSYMSEITGPLSPFSSSSEFSSVTSDHTSAASNGNLLLEDDDFSFLDAYAETVDIETFWTESLLADISSSTPSETVLDYTNCAFQNQDDTQNNLDGSLFSPHQSSSESLVVENEFGSIPTIDNFWGQQYVADICHVPSEMLTPFVAESEYFSTVYDAELWSQNNLYDQHVSLFQ. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04396 248 CDD SANT 1 32 IPR001005 -
Seca3g04396 248 ProSiteProfiles Myb-like domain profile. 1 32 IPR001005 -
Seca3g04396 248 MobiDBLite consensus disorder prediction 33 53 - -
Seca3g04396 248 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 1 36 IPR017930 -
Seca3g04396 248 Gene3D - 1 62 - -
Seca3g04396 248 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 148 - -
Seca3g04396 248 MobiDBLite consensus disorder prediction 33 62 - -
Seca3g04396 248 Pfam Myb-like DNA-binding domain 2 31 IPR001005 -
Seca3g04396 248 SMART sant 1 34 IPR001005 -
Seca3g04396 248 SUPERFAMILY Homeodomain-like 2 39 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04396 Seca-Chr3 85652565 85654215 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04396 1 82 MYB Transcription Factor Family AT2G31180 47.561 1.27e-15 72.4
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g04396 Myb_DNA-binding 1.6e-09 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04396 K09422 - gmx:100777107 214.542