Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04392 ATGGTAAGAGCCCCTTTCTATGACAAAAATGGAGTGAAGAAAGGAGCATGGAGTAGAGAAGAGGATGAGAGGTTAAGAGCTTATATTCACAGACATGGTCTTACTAATTGGCGTCAACTCCCCAGGGTTGCAGGTTTAACAAGATGTGGCAAAAGTTGCAGACTCCGTTGGTTGAATTACCTAAGGCCAAATCTAAAACATGGGAACTACACTCGAGAGGAAGATGAAATAATCATCAAATTACACCGACAACTTGGAAATAATATATATCTGAACATTAGTGTCTATGACTTCCCAGATGGTCCAAGATTGCTGAACATTTGCCTGGAAGAACGGACAACGAGGTAA 348 0.4109 MVRAPFYDKNGVKKGAWSREEDERLRAYIHRHGLTNWRQLPRVAGLTRCGKSCRLRWLNYLRPNLKHGNYTREEDEIIIKLHRQLGNNIYLNISVYDFPDGPRLLNICLEERTTR. 116
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04392 115 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca3g04392 115 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca3g04392 115 SUPERFAMILY Homeodomain-like 15 88 IPR009057 -
Seca3g04392 115 CDD SANT 16 61 IPR001005 -
Seca3g04392 115 SMART sant 13 63 IPR001005 -
Seca3g04392 115 Gene3D - 7 67 - -
Seca3g04392 115 PANTHER OS09G0431300 PROTEIN 1 86 - -
Seca3g04392 115 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca3g04392 115 FunFam Transcription factor RAX3 7 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04392 Seca-Chr3 85478426 85480365 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04392 1 91 MYB Transcription Factor Family AT4G38620 64.835 2.61e-37 125
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca3g04392 Myb_DNA-binding 3.1e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04392 K09422 - gmx:100776043 162.155