Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04391 ATGGAGCACAATGAATGTCAGGCATTTGAAATTGATGAGCCTAAAGATATTTTTTTGGGTCAAGTTGTGTATAGCAAAGATGAAGCTTATAACGTATACCAAGAACATGCATTCAAAATGGGTTTTAGTGTAAGAAGAGGGAGGGCGTTGTACTATGATAGTGAGAAAAAGAATATACGGTTTAAGAATAATGAACCTCAAGGTGAAGTGACTTATGAAAGAGCAGATTCAAGAACAAATTGCCAAGCTATGGTGAGATTTAATGTGAGTAAGGAAGGATTATGGAAAATTACAAAGCTGGAATTAAATCACAACCATGACTTTGTGCCACCTGAGCAAAGGCATTTGTTACGTTCTATGAGAAATATGTCAAATGCCAAAGGAGACCTCATAAAATCCATGGTGAATGCCGGTATGAGAGTTACTAATATTTGGAGTTATTTAGGAGAAGAGGTTGGTGGGTGTGATAACCTCGGTATAACAATGAAAGATATGCATAATTATGTTTACTCTGAAAAGATGAAATTAATTGATGCTGGTGATGCCCAGGCTTTAGTGAACCACTTACAAAGTAGACAAGCACAAGATGCAATGTTCTACTATAGTGTTCAGTTAGACCAGGAATCACGTTTGGCTAATGTATTTTGGAGAGATGGTAAATCTAAAGTTGATTATAATTGCTTTGGGGATGTTGTGGTTTTTGACACCACTTACCGTACTAACAAATATAACTTGATTTGTGCCCCATTTGTTGGTGTAAATCATCATTGGCAAAATGTCATGTTTGGTTGTGCCTTACTATCTAATGAAACTTCAGCTTCTTTTTCTTGGTTGTTCAAAGTGTTTTTGGAAAGCATGGAAAACAAACAACCAAAAACAATTTTTACAGATCAAGATGCTGCTATGGCTAAAGCAATTGGAGAGGTAATGTTAAATACACGCCATCGATTATGCTTATGGCATATAGCTAAAAATGCTCCTTCTCATTTGGGTTCTCTCAATTCTGATTATAAGTTTCAAAGCTTATTCAATAAATGCATGAAAGGTTGTGACTCAGAAGAAGAATTTCAAAGCACTTGGGATGAGATGATAACCGAGTACAAACTTCATGATCATCAATGGTTGAGCAATATGTATAAAATCCGTCACAAGTGGAGCACTGCTTTTAGCAAAGATATATTCTCTGCTGGTATCAAGTCCTCTCAAAGGAGTGAAAGTACAAATAGTGTTTTGAATGAGATTGCAGGAAAAACAACAAGTCTCACACAATTCATATTGGCATTTGAGAAGATGGTAAAAAAGTGGCGGCATTTAGAGGTTGAGAAGGAATTCAAAAATAAGCAAAGTGAGCCTCCTCGCATTATAAATATTAGTGAAACTCTGCGACAAGCATCTATGATATATACTCACAAGATCTTTAAATTGTTCTTGAATGAATATCTTGATGGCACGGGTGGAAGCACTTCTATGCAGATTGGTGGGTGTGATAATGTGTCATATCATGAAGTAATTTTGAACAATATGCCTAATAAGAAATATATGGTAACATTTGACTCTTCCACTATTATGATTAATTGTAGCTGCCGCAAATTTGATTCCATGGGTATTCTTTGTAGTCATTCTTTGAGAATTTACAACATTAAAGGTATTCTAAAAATACCTGATCAATACTTCTTAAAAAGATGGTCAAAAGAGGCAAGGTCCATGATTTATGAGCATACAAAAGAAGATTCTAGCTCCAGTAACATTAATTCAATGATCAATGGTGATGATGCTGATTTTGTTTATCGAAATGCTATTATGAAGTCATTTTATAATCTTGTTTTGGAAACTCAAGAACATAAAGAAGCTCAAGAAATTATGTGGAAATTGCTTGATATTGGAGTTGAGCTTGTGAGACAATGTGTCGGTAAGCTCAATTTAAATTCAAATTCAAATTTAGAAACCATCGATATTGAGGACAATGAGTGTGCTGCAATTTTTAATCCCCCTCTTGCAAAGACTAAAGGGATGTCTAGTGCTCGGAAGAAGGGGCATTTTGAGAAAAGGAAACGATCAACCACAAAAGCAAAGAAAGGTAGGGATTGA 2088 0.353 MEHNECQAFEIDEPKDIFLGQVVYSKDEAYNVYQEHAFKMGFSVRRGRALYYDSEKKNIRFKNNEPQGEVTYERADSRTNCQAMVRFNVSKEGLWKITKLELNHNHDFVPPEQRHLLRSMRNMSNAKGDLIKSMVNAGMRVTNIWSYLGEEVGGCDNLGITMKDMHNYVYSEKMKLIDAGDAQALVNHLQSRQAQDAMFYYSVQLDQESRLANVFWRDGKSKVDYNCFGDVVVFDTTYRTNKYNLICAPFVGVNHHWQNVMFGCALLSNETSASFSWLFKVFLESMENKQPKTIFTDQDAAMAKAIGEVMLNTRHRLCLWHIAKNAPSHLGSLNSDYKFQSLFNKCMKGCDSEEEFQSTWDEMITEYKLHDHQWLSNMYKIRHKWSTAFSKDIFSAGIKSSQRSESTNSVLNEIAGKTTSLTQFILAFEKMVKKWRHLEVEKEFKNKQSEPPRIINISETLRQASMIYTHKIFKLFLNEYLDGTGGSTSMQIGGCDNVSYHEVILNNMPNKKYMVTFDSSTIMINCSCRKFDSMGILCSHSLRIYNIKGILKIPDQYFLKRWSKEARSMIYEHTKEDSSSSNINSMINGDDADFVYRNAIMKSFYNLVLETQEHKEAQEIMWKLLDIGVELVRQCVGKLNLNSNSNLETIDIEDNECAAIFNPPLAKTKGMSSARKKGHFEKRKRSTTKAKKGRD. 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04391 695 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 11 626 IPR031052 GO:0006355
Seca3g04391 695 MobiDBLite consensus disorder prediction 668 695 - -
Seca3g04391 695 SMART 26again6 524 551 IPR006564 GO:0008270
Seca3g04391 695 MobiDBLite consensus disorder prediction 672 695 - -
Seca3g04391 695 Pfam FAR1 DNA-binding domain 32 109 IPR004330 -
Seca3g04391 695 Pfam MULE transposase domain 231 325 IPR018289 -
Seca3g04391 695 ProSiteProfiles Zinc finger SWIM-type profile. 513 549 IPR007527 GO:0008270
Seca3g04391 695 Pfam SWIM zinc finger 519 543 IPR007527 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04391 Seca-Chr3 85447869 85449986 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g04391 MULE 2.7e-28 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04391 - - tpra:123905334 1077.39