Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04390 ATGGTGAGAGCTCCTTATTTTGATGAAAATGGAATAAAAAAAGGTGCATGGAGTGAGGAAGAGGATAAGAGACTTATAGCTTACATTGAGAAACATGGCCATCCTAATTGGCGTCAACTCCCAAAGTTTGCAGGTTTGGCTAGATGTGGAAAGAGTTGCAGGCTTCGTTGGATGAATTACCTACGACCCAATCTAAAACGTGGGAACTATACCCAAGAGGAAGAGCAAATAATCACGGAGTTGCATAAAAAGCATGGAAACAAGTATGGATTTGTCACACTTCTCATAATCTTCATTCTCTTAGGTGTAAGATGGTCTCTGATTGCTGAAAATCTACCTGGCAGAACAGATAACGAGATAAAGAACTATTGGCACAGCAACCTAAAGAAGTTCTCACAGAGTAATGAGATCACAACATCTGATGATGAATTCAAGTCCTCCAAGTGTGCAGAATTTGAAAAGCCATCATCAAGCGAGGCTATTAGTGCTGATTCCCACCACATTTTGGAAAGTTCATTGTCCAACTCCATTTCCTCGGAAGTGTCCTACACTGAACACAATTCCCCTTCCTTTTCCTCTAATCATTCGGATTCAAACGTGAACTTGTCCAGAGAAGAAGAGAGAGTTGCTTCATGGGAAACATGGGATGGATTCAGCAGCAGTTTTTGGACTGAACCGTTTATTTCAGAAAACGCTTTTAGTCAGAATGATTACTTTCCCATTTCATGCTACGGAACAGAGGAAGAGGAACCATTTTTTATATGGTAG 768 0.4062 MVRAPYFDENGIKKGAWSEEEDKRLIAYIEKHGHPNWRQLPKFAGLARCGKSCRLRWMNYLRPNLKRGNYTQEEEQIITELHKKHGNKYGFVTLLIIFILLGVRWSLIAENLPGRTDNEIKNYWHSNLKKFSQSNEITTSDDEFKSSKCAEFEKPSSSEAISADSHHILESSLSNSISSEVSYTEHNSPSFSSNHSDSNVNLSREEERVASWETWDGFSSSFWTEPFISENAFSQNDYFPISCYGTEEEEPFFIW. 256
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04390 255 CDD SANT 16 61 IPR001005 -
Seca3g04390 255 ProSiteProfiles Myb-like domain profile. 62 128 IPR001005 -
Seca3g04390 255 Gene3D - 13 66 - -
Seca3g04390 255 SMART sant 13 63 IPR001005 -
Seca3g04390 255 SMART sant 66 130 IPR001005 -
Seca3g04390 255 SUPERFAMILY Homeodomain-like 11 124 IPR009057 -
Seca3g04390 255 Pfam Myb-like DNA-binding domain 67 127 IPR001005 -
Seca3g04390 255 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca3g04390 255 CDD SANT 69 128 IPR001005 -
Seca3g04390 255 Gene3D - 69 130 - -
Seca3g04390 255 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca3g04390 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 66 132 IPR017930 -
Seca3g04390 255 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Seca3g04390 255 FunFam MYB-related transcription factor 13 66 - -
Seca3g04390 255 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 226 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04390 Seca-Chr3 85433000 85434299 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04390 1 130 MYB Transcription Factor Family AT5G16770 60.769 3.79e-52 171
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g04390 Myb_DNA-binding 3.6e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04390 K09422 - gmx:100781032 352.829