Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04387 ATGGGAGATTTACTGGTGGGTAGTCCAATTATCCCACTTGCTGACGATTTTCTGAAACTTTATCCGAGGAAGACTCCAGAACAACTCCAATTGATAGAGGAGGATGGAACATTTATTGTACTAGCCACTATCATTGGAATTATTAAGGATGAGCAGTGGTGGTATGGAGCTTGCAAGTGTCACAAGGCTGTGACGCCTGATGGAGGTCTATACTATTGCTCAAATTGCTGCACTCACATGGTGGAAGTTACTCCAAGGTTTAATGTGAAGGTGGAGGTATGTCATTGGGATGAAAGTGTTGTATTTGTTCTATTTGACTCTGATGTAGCTCAATTGTTAGGCAAGTCGTGTAAGGAGTTACTTGCGGAGGCAAAGGTTTGA 381 0.4252 MGDLLVGSPIIPLADDFLKLYPRKTPEQLQLIEEDGTFIVLATIIGIIKDEQWWYGACKCHKAVTPDGGLYYCSNCCTHMVEVTPRFNVKVEVCHWDESVVFVLFDSDVAQLLGKSCKELLAEAKV. 127
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04387 126 SUPERFAMILY Nucleic acid-binding proteins 31 123 IPR012340 -
Seca3g04387 126 Pfam Replication factor-A C terminal domain 40 121 IPR013955 -
Seca3g04387 126 CDD RPA1_DBD_C 27 123 IPR047192 -
Seca3g04387 126 Gene3D - 19 125 IPR012340 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04387 Seca-Chr3 85309085 85309705 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04387 31 120 Core DNA Replication Machinery Family AT5G61000 34.043 1.38e-06 44.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04387 - K00266 lja:Lj3g3v3527180.1 139.043