Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04381 ATGAGTAATTTCTTCACAAACAACTCATCCATGGAGTTTGACCTTGAAAACCCTTTAGAAAACTTCCATGACCTTGACTGTGATGCTGTCTCTTCCCTCTTCCTCATTGAATCTGACCACATCCCACCACAAAATTACTTTCAGACCCTCAAAGCCAGAGATCTTGACATCTCTGCCAGAAGAGAAGTCATTTCTTTAATCTCACAGTTGTCTTGCACTTTGGATCCAGTTTTGTCTTACCTTGCTATCAACTATCTGGACCGGTTCCTGGCCAACCAAGGGTTATTGCAAACAAAGCCATGGGTCCTAAGGCTTCTTGCAGTCTCTTGCTTTTCTCTAGCTGCCAAGATGATGAGAACAGAGTACTCTGCCACAGATGTTCAGGCCCTTTTGGAACAAAGTAAAGGTGGCATCATCTTTGAGGCACAAACAATACAAAGAATGGAGGCACTTATCTTGGGAGCTCTACAATGGAGAATGCGATCAATCACCCCCTTCTCTTTCATAACTTTCTTCATTAATTTGTTCAGTCTCAAAGACCCACACACTGGGAAGGTTCTGAAAAACCGAGCGTCTGAAATCATATTCAAGTCACAAAGAGAGATAAAGCTTTGGGAATTCAAGCCATCTATAATTGCAGCATCGGCACTTTTATGTGCTTCTCACAAATTATTCCCTTTTCAATATCCGTGCTTCTTAAGAGCATTATCCGATTGTTCATACGTAAATAAAGAAAACATGCTGCGATGCTATAATGTGATACAGGATATAGCTACAGAGGAGCAGAATGAGTCTGTGTTGAATGCAGTTTCAAGTTCAGACACACCGGTTAATGTGTTGGACCATCATTTTCTGAGTTCAGAAAGTGAAATAACCAACGGGATCACCGTTGATGCTTCTTCTCCTCAGAGACAAGAGAAGGATCTCAAAAGAAGGAAAATCACTGGATGCGGTAACAATCCAACGACCCAGAATTCCCTTATTAAACCATGCTGA 996 0.4157 MSNFFTNNSSMEFDLENPLENFHDLDCDAVSSLFLIESDHIPPQNYFQTLKARDLDISARREVISLISQLSCTLDPVLSYLAINYLDRFLANQGLLQTKPWVLRLLAVSCFSLAAKMMRTEYSATDVQALLEQSKGGIIFEAQTIQRMEALILGALQWRMRSITPFSFITFFINLFSLKDPHTGKVLKNRASEIIFKSQREIKLWEFKPSIIAASALLCASHKLFPFQYPCFLRALSDCSYVNKENMLRCYNVIQDIATEEQNESVLNAVSSSDTPVNVLDHHFLSSESEITNGITVDASSPQRQEKDLKRRKITGCGNNPTTQNSLIKPC. 332
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04381 331 CDD CYCLIN_AtCycD-like_rpt2 163 254 - -
Seca3g04381 331 SMART cyclin_7 61 154 IPR013763 -
Seca3g04381 331 Pfam Cyclin, C-terminal domain 163 267 IPR004367 -
Seca3g04381 331 PANTHER CYCLINS 33 262 IPR039361 -
Seca3g04381 331 FunFam D6-type cyclin 43 157 - -
Seca3g04381 331 SUPERFAMILY Cyclin-like 21 160 IPR036915 -
Seca3g04381 331 SMART Cyclin_C_2 163 291 IPR004367 -
Seca3g04381 331 Gene3D - 32 252 - -
Seca3g04381 331 Pfam Cyclin, N-terminal domain 35 160 IPR006671 -
Seca3g04381 331 FunFam D6-type cyclin 158 252 - -
Seca3g04381 331 Gene3D - 43 161 - -
Seca3g04381 331 SUPERFAMILY Cyclin-like 145 259 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04381 Seca-Chr3 85237341 85239766 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04381 11 311 Core Cell Cycle Gene Families AT4G03270 45.541 7.42e-81 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04381 K18812 - gmx:100820404 467.233