Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04373 ATGTTCAGGGAGAAAGTTAATATTCCTGCTTTGAAATCCTTCATAACCATAGAAGGAGCTGGTGCAAATAAAACCATTGTTCAATGGAATGACATTGCTCAAACACCTGGACCAAGTGGGAAACCATTGGGAACCATTGGTTCAGCAACTTTTTCTGTGAATTCACTTTATTTCATTTCCAAGAACATAACATTCCAAAACACTACTCCTGTTCCTGCACCAAGAGCAATTGGAAAACAAGCAGTGGCATTTAGGATTTCAGCAGACACAGCAGCATTCCTTGGCTTGTTCTTAGTTTCCTTTTCCAACTTAGAGGATGTTGATAGGAACTGCAAGGCTCTAGTGCAAAAAGGCATTGTTCGTGTTGCAGATATAAAATTCCTTCTACCATACAGGGTAAAGTCTTTTTCTCATGTCATAGTGTCACAACTAAGAACAAATTAA 444 0.3874 MFREKVNIPALKSFITIEGAGANKTIVQWNDIAQTPGPSGKPLGTIGSATFSVNSLYFISKNITFQNTTPVPAPRAIGKQAVAFRISADTAAFLGLFLVSFSNLEDVDRNCKALVQKGIVRVADIKFLLPYRVKSFSHVIVSQLRTN. 148
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04373 147 SUPERFAMILY Pectin lyase-like 2 100 IPR011050 -
Seca3g04373 147 Pfam Pectinesterase 2 94 IPR000070 GO:0030599|GO:0042545
Seca3g04373 147 Gene3D - 1 120 IPR012334 -
Seca3g04373 147 PANTHER ACYL-COA THIOESTER HYDROLASE YBHC-RELATED 1 100 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04373 Seca-Chr3 85090479 85091014 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04373 1 96 Carbohydrate Esterase AT5G47500 46.875 3.02e-23 91.7