Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04357 ATGGACGAGTACCATTGTAGAGCATACCCAAACATCGCTGCTGCCAATGGCTTTGCCGTAGAAAATTCACTCTGCCCCGATGATCAATACTTCAATGTAGAGGTTGAATACACAAATATGTACGTTTTGAATGCCAGGGAATTCCACACTTTTTGTGATACAACGTATCACGGTTTCTTGAATATCTCAAAGTGTAAAATGTTGCAAGAAGCAACAATAGTATCTTGGCTTTCCAATATGGGTGTGCCTAAGGATGCTTATAAGTTAGTGATGGACAACATCTTGGATTGTGCTCATGACATGACCAATAGGACTCATAAGCACAAAAAGATTCTATCAATGCGTGTGGATGTGATTATCACTCGGGCCAGTGAAGATGGAACTGATGTAGACGACGACGATGATTTTGAAGAAGAGGAGGATGAAGATCATGGGTTGGTGCCTGCGGCTAAATCATCTATTGAGGAATTGAAGATGGTGAAGGTTGAAGAACAAGAAGGGTCTAAGCAGGGAAGGTGTCCAATCTGTTTTGAAGATTTTCTTCTTGCTGTCCGTATGCCGTGTTTGCATATGTTTCATAGAAATTGCATCCATGGTTGGTTGCAAGTAGGCAATTCTTGCCCTTTGTGTCGGTTTCAGATGCCTACTAGTGAAAAGTGA 660 0.4167 MDEYHCRAYPNIAAANGFAVENSLCPDDQYFNVEVEYTNMYVLNAREFHTFCDTTYHGFLNISKCKMLQEATIVSWLSNMGVPKDAYKLVMDNILDCAHDMTNRTHKHKKILSMRVDVIITRASEDGTDVDDDDDFEEEEDEDHGLVPAAKSSIEELKMVKVEEQEGSKQGRCPICFEDFLLAVRMPCLHMFHRNCIHGWLQVGNSCPLCRFQMPTSEK. 220
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04357 219 Pfam Ring finger domain 172 211 IPR001841 -
Seca3g04357 219 ProSiteProfiles Zinc finger RING-type profile. 173 211 IPR001841 -
Seca3g04357 219 SUPERFAMILY RING/U-box 154 215 - -
Seca3g04357 219 PANTHER E3 UBIQUITIN-PROTEIN LIGASE PRAJA 120 215 - -
Seca3g04357 219 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 134 217 IPR013083 -
Seca3g04357 219 SMART ring_2 173 210 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04357 Seca-Chr3 84894502 84895161 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04357 138 219 C3H Transcription Factor Family AT5G01980 40.000 1.12e-14 70.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04357 - - cam:101499491 259.225