Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04348 ATGCGTTTTTCTCCTTTCAAAATCGAAATTCCTGACATGAACCGGACACAATCGTTCTTAGGGTTGTGCCATCGAGCTGGATTATTAATGTTGTTGAGGACAATGATTCAGTTTGAGAAATATAGAGACTTCCATGATGCATTGAGAGTTCTATGTGGTCGTTCATTGAAAAAGCTTGGCAACCCAGTTCTAGAATTTGCAACAGATTTCAATTCTAGAGCTGAGTTCTTCTGGTCTCATGGATTAATCTCAGACTTAACGTTTAAAATGTTCACTTCTGTTTGTAACTATTCAAGATATGTGAGGGAATACTATAGTGGCTCTATTTCTCCTATCTGTTCAAGTGTTATGAGCCAAGTTGCACCAGCAGAACTTGAAGGGCTTCTTGTTTCTCATTCTGAAATACTTGATGTTGTTGTCATCCCATATCCCGATGCTGACGATGGTGAGGTTCCAATTGCCTATGTTGTTTGTTCACCCAATAGTTCACTAACTGAGGAAGATGTTCAAAAGTTTATTGCTAATCAGATTCATTACTACTATTGTGCTTGA 552 0.3822 MRFSPFKIEIPDMNRTQSFLGLCHRAGLLMLLRTMIQFEKYRDFHDALRVLCGRSLKKLGNPVLEFATDFNSRAEFFWSHGLISDLTFKMFTSVCNYSRYVREYYSGSISPICSSVMSQVAPAELEGLLVSHSEILDVVVIPYPDADDGEVPIAYVVCSPNSSLTEEDVQKFIANQIHYYYCA. 184
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04348 183 Gene3D - 116 183 IPR045851 -
Seca3g04348 183 PANTHER LONG-CHAIN-FATTY-ACID--COA LIGASE 119 180 - -
Seca3g04348 183 Pfam AMP-binding enzyme C-terminal domain 124 182 IPR025110 -
Seca3g04348 183 SUPERFAMILY Acetyl-CoA synthetase-like 120 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04348 Seca-Chr3 84752949 84754646 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04348 119 180 Monolignol Biosynthesis Gene Families AT4G05160 74.194 2.96e-25 99.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04348 K16297 - gmx:100805130 123.635