Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04347 ATGGGAAGAGTTCCTTGTTGTGACAAGAATGGGCTCAAGAAGGGCCCATGGACACCTGAGGAAGACCTTAAGCTCATCAACTACATTCAGATTCATGGACCAGGCAATTGGCGAACCCTCCCTAAGAATGCCGATCTAGAAAGGTGTGGCAAGAGTTGCCGCCTTCGATGGACAAATTACCTTAGACCCGATATCAAGAGAGGAAGATTCTCCTTCGAAGAAGAAGATATTATTATTCAGTTGCACAGTATCTTGGGCAACAAATGGTCAGCTATAGCAGCTAGATTGCCAGGAAGAACTGACAATGAAATAAAGAACTACTGGAACACTCACATTAGGAAGAGGCTGCTTCGAATGGGAATTGACCCTGTTACTCACACCCCACGCCTTGACATGTCCTCTATCTTAAGGTCAATGTTGGCCAACCCGTCATCCCTTTTGAATGTACAAGGCTTATTGGGTAGTGCCCAAGCTGTGATGAACCAGGAATTGTTAAAGCTGGCAGCCACTGCCTCTCTTCTATCAATCAAGAATGAGAACAACCCAGATTTGGCTTCACAGAATCTACAAGTACAAAGCCAAATGGAAATGGGCCCACCACTAGAGTTTATTACTCAGTTTCAAATGCCCACTGAAACGACCTCCAATGTAGAAGGCTTCTCAGGCAACATAACAAACATGTGCTGCTCAAGTTCCTCATTGAATTCAACCCCTGCATATAAGGGTGAGAACCTTGTTTTGCAGCAAAATCAAGTTGATGATTTGCTTGGGGACCAGGCTTTGGTTCACTCCCTAAACAATGCAAATTACCAAAACATGGGGTATGAGTATGATTCGGTTCTGCCTACGCCTCTATCAAGCCCAAACAAGTTGAATTCATCATCCGCGTGTGTGAACAGCAGCGCGGAGGAAGAGAAGGATAGTTATTGTAGTGACTTATTCAAGTTCGAAATTCCAGAGAGTGTGGATATTAGTGACTTCTTTGTTATGTCTCACTAA 999 0.4414 MGRVPCCDKNGLKKGPWTPEEDLKLINYIQIHGPGNWRTLPKNADLERCGKSCRLRWTNYLRPDIKRGRFSFEEEDIIIQLHSILGNKWSAIAARLPGRTDNEIKNYWNTHIRKRLLRMGIDPVTHTPRLDMSSILRSMLANPSSLLNVQGLLGSAQAVMNQELLKLAATASLLSIKNENNPDLASQNLQVQSQMEMGPPLEFITQFQMPTETTSNVEGFSGNITNMCCSSSSLNSTPAYKGENLVLQQNQVDDLLGDQALVHSLNNANYQNMGYEYDSVLPTPLSSPNKLNSSSACVNSSAEEEKDSYCSDLFKFEIPESVDISDFFVMSH. 333
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04347 332 CDD SANT 69 112 IPR001005 -
Seca3g04347 332 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Seca3g04347 332 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Seca3g04347 332 CDD SANT 16 61 IPR001005 -
Seca3g04347 332 Gene3D - 13 66 - -
Seca3g04347 332 Pfam Myb-like DNA-binding domain 67 111 IPR001005 -
Seca3g04347 332 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Seca3g04347 332 FunFam MYB-related transcription factor 13 66 - -
Seca3g04347 332 Gene3D - 69 116 - -
Seca3g04347 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Seca3g04347 332 SMART sant 66 114 IPR001005 -
Seca3g04347 332 SMART sant 13 63 IPR001005 -
Seca3g04347 332 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 266 - -
Seca3g04347 332 FunFam Transcription factor MYB39 69 130 - -
Seca3g04347 332 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Seca3g04347 332 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04347 Seca-Chr3 84743128 84744635 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04347 1 329 MYB Transcription Factor Family AT4G21440 47.425 2.05e-95 285
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g04347 Myb_DNA-binding 4.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04347 K09422 - gmx:100817731 442.965