LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g04340	ATGCGTTGGTCTTCCTTCTATCACACAGCCTCAAGGGTTTTTCATGAATATCCATCCTTGTCCAAGTCTGTTGTTATATGCACTGTCATAAGTGGTGGAGGTATAGTAGCATATAGTGATGCAGGACCAGCACAGAGTGATCAAAACAGGAAAAAGAAGGTGGTGGTTCTTGGAACTGGTTGGGCTGGAACCAGTTTTTTGAAAAGCATGAAAAACTCCTCCTATGATATTCATGTAGTTTCACCACGCAACTATTTTGCATTCACTCCTTTGCTACCAAGTGTCACATGTGGCACAGTGGAGGCACGGAGCATTGTTGAACCCATTCGCACTATCTCCCGAAAGAGTGGTGCAAATATTCAATTCAGTGAAGCTGAATGCTATAAGATTGATCCCAAGAACAATAAAGTTTATTGCCATGCTGCTCAAAACAAAAAGCTTGGTGGCTTAGAAGATTTTTCCATTGATTATGATTATTTGATCATAGCTATGGGAGCACGTCCTAATACATTCAACACACCTGGTGTTCAGGAGCATGCCTACTTCTTGAAGGAAGTGGAAGATGGTCTAAGAATCCGGCGAGAAGTGATTAACCTCTTTGAAAGAGCAAGCCTTCCTTCTTTACCAGTGGAAGAGAAGAAAAAGCTTCTCAGTTTTGTAATTGTTGGTGGTGGTCCAACTGGGGTAGAGTTTGCTGCAGAGCTTCATGATTTTGTACATGAGGATCTACATAAATTATATCCTTCCCTTGTAGAACATGTCAAGATTATTCTCCTTGAGGCAGGAGATCATATCTTAAACATGTTTGACAAGAGAATTACAGAATTTGCTGAAACAAAGTTCAAAAGAGATGGCATTGATGTGAGGTTGGGATCTATGGTTGTCAAAGTTGGTGAAAATGAAATCACTGCCAAAGAAAGAGGAACTGGTCAAGTTGTAAGTATTCCTCATGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCTGAAATACTTGAATTTATGAAGCAGCTTGGCCAGGTTAACAGGCGTGCATTAGTCACTGATGAATGGTTAAGGGTGGAAGGATGTGACAACATCTATGCTCTAGGTGATTGTGCCACTATAAATCAGCGTAAAGTTATGGAAGATATAGCTGTGATATTTAGCAAGGCAGACAAGAACAATTCAGGAAGGTTAGATCTTAAAGAGTTTCATGACGTGGTTGATGACATTATTGAGAGGTATCCACAAGTGGATATTTATTTAAAGAAGAACCAAATGAAGGATATGGCCACCTTGCTAAACCAATCTCGGGAAACCTCTGCTATGGTTGACATTGAATACTTTAAAGAAGCTCTTTCCAAAGTAGATTCTCAGATGAAAAATCTCCCTGCAACAGCTCAGGTAGCTGCTCAACAAGGCACCTATCTTGCTGACTGTTTCAATCGGATGGAGTTGTGTGAGAGGTATCCTGAAGGCCCTCTCAGGTTCAGGGGAACAGGACGCCATCGGTTTCGTCCCTTCAGGTACAAGCATTTTGGACAATTTGCTCCTCTAGGAGGAGAACAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCATAGCACACAGTGGCTCTGGTATTCTATATATACAAGCAAACTGGTCAGCTGGAGAACAAGGGCTTTGGTGGTATCTGACTGGACAAGGCGATTCATATTTGGTAGGGACTCAAGTCAAATCTGA	1719	0.4183	MRWSSFYHTASRVFHEYPSLSKSVVICTVISGGGIVAYSDAGPAQSDQNRKKKVVVLGTGWAGTSFLKSMKNSSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRTISRKSGANIQFSEAECYKIDPKNNKVYCHAAQNKKLGGLEDFSIDYDYLIIAMGARPNTFNTPGVQEHAYFLKEVEDGLRIRREVINLFERASLPSLPVEEKKKLLSFVIVGGGPTGVEFAAELHDFVHEDLHKLYPSLVEHVKIILLEAGDHILNMFDKRITEFAETKFKRDGIDVRLGSMVVKVGENEITAKERGTGQVVSIPHGMVVWSTGIGARPEILEFMKQLGQVNRRALVTDEWLRVEGCDNIYALGDCATINQRKVMEDIAVIFSKADKNNSGRLDLKEFHDVVDDIIERYPQVDIYLKKNQMKDMATLLNQSRETSAMVDIEYFKEALSKVDSQMKNLPATAQVAAQQGTYLADCFNRMELCERYPEGPLRFRGTGRHRFRPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSIYTSKLVSWRTRALVVSDWTRRFIFGRDSSQI.	573

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g04340	572	Pfam	Pyridine nucleotide-disulphide oxidoreductase	52	376	IPR023753	GO:0016491
	Seca3g04340	572	SUPERFAMILY	FAD/NAD(P)-binding domain	51	270	IPR036188	-
	Seca3g04340	572	Gene3D	-	43	395	-	-
	Seca3g04340	572	Gene3D	-	449	571	-	-
	Seca3g04340	572	SMART	efh_1	378	406	IPR002048	GO:0005509
	Seca3g04340	572	ProSiteProfiles	EF-hand calcium-binding domain profile.	374	409	IPR002048	GO:0005509
	Seca3g04340	572	SUPERFAMILY	EF-hand	368	458	IPR011992	-
	Seca3g04340	572	ProSitePatterns	EF-hand calcium-binding domain.	387	399	IPR018247	-
	Seca3g04340	572	PRINTS	FAD-dependent pyridine nucleotide reductase signature	54	73	-	-
	Seca3g04340	572	PRINTS	FAD-dependent pyridine nucleotide reductase signature	218	236	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g04340	Seca-Chr3	84531973	84536348	Dispersed/Tandem

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g04340	1	572	Chloroplast and Mitochondria Gene Families	AT4G21490	67.698	0.0	805

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g04340	K03885		-	gmx:100820044	999.964

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