Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04340 ATGCGTTGGTCTTCCTTCTATCACACAGCCTCAAGGGTTTTTCATGAATATCCATCCTTGTCCAAGTCTGTTGTTATATGCACTGTCATAAGTGGTGGAGGTATAGTAGCATATAGTGATGCAGGACCAGCACAGAGTGATCAAAACAGGAAAAAGAAGGTGGTGGTTCTTGGAACTGGTTGGGCTGGAACCAGTTTTTTGAAAAGCATGAAAAACTCCTCCTATGATATTCATGTAGTTTCACCACGCAACTATTTTGCATTCACTCCTTTGCTACCAAGTGTCACATGTGGCACAGTGGAGGCACGGAGCATTGTTGAACCCATTCGCACTATCTCCCGAAAGAGTGGTGCAAATATTCAATTCAGTGAAGCTGAATGCTATAAGATTGATCCCAAGAACAATAAAGTTTATTGCCATGCTGCTCAAAACAAAAAGCTTGGTGGCTTAGAAGATTTTTCCATTGATTATGATTATTTGATCATAGCTATGGGAGCACGTCCTAATACATTCAACACACCTGGTGTTCAGGAGCATGCCTACTTCTTGAAGGAAGTGGAAGATGGTCTAAGAATCCGGCGAGAAGTGATTAACCTCTTTGAAAGAGCAAGCCTTCCTTCTTTACCAGTGGAAGAGAAGAAAAAGCTTCTCAGTTTTGTAATTGTTGGTGGTGGTCCAACTGGGGTAGAGTTTGCTGCAGAGCTTCATGATTTTGTACATGAGGATCTACATAAATTATATCCTTCCCTTGTAGAACATGTCAAGATTATTCTCCTTGAGGCAGGAGATCATATCTTAAACATGTTTGACAAGAGAATTACAGAATTTGCTGAAACAAAGTTCAAAAGAGATGGCATTGATGTGAGGTTGGGATCTATGGTTGTCAAAGTTGGTGAAAATGAAATCACTGCCAAAGAAAGAGGAACTGGTCAAGTTGTAAGTATTCCTCATGGAATGGTAGTTTGGTCAACTGGTATTGGTGCTCGCCCTGAAATACTTGAATTTATGAAGCAGCTTGGCCAGGTTAACAGGCGTGCATTAGTCACTGATGAATGGTTAAGGGTGGAAGGATGTGACAACATCTATGCTCTAGGTGATTGTGCCACTATAAATCAGCGTAAAGTTATGGAAGATATAGCTGTGATATTTAGCAAGGCAGACAAGAACAATTCAGGAAGGTTAGATCTTAAAGAGTTTCATGACGTGGTTGATGACATTATTGAGAGGTATCCACAAGTGGATATTTATTTAAAGAAGAACCAAATGAAGGATATGGCCACCTTGCTAAACCAATCTCGGGAAACCTCTGCTATGGTTGACATTGAATACTTTAAAGAAGCTCTTTCCAAAGTAGATTCTCAGATGAAAAATCTCCCTGCAACAGCTCAGGTAGCTGCTCAACAAGGCACCTATCTTGCTGACTGTTTCAATCGGATGGAGTTGTGTGAGAGGTATCCTGAAGGCCCTCTCAGGTTCAGGGGAACAGGACGCCATCGGTTTCGTCCCTTCAGGTACAAGCATTTTGGACAATTTGCTCCTCTAGGAGGAGAACAAACTGCAGCTCAGCTTCCAGGAGATTGGATTTCAATTGGTCATAGCACACAGTGGCTCTGGTATTCTATATATACAAGCAAACTGGTCAGCTGGAGAACAAGGGCTTTGGTGGTATCTGACTGGACAAGGCGATTCATATTTGGTAGGGACTCAAGTCAAATCTGA 1719 0.4183 MRWSSFYHTASRVFHEYPSLSKSVVICTVISGGGIVAYSDAGPAQSDQNRKKKVVVLGTGWAGTSFLKSMKNSSYDIHVVSPRNYFAFTPLLPSVTCGTVEARSIVEPIRTISRKSGANIQFSEAECYKIDPKNNKVYCHAAQNKKLGGLEDFSIDYDYLIIAMGARPNTFNTPGVQEHAYFLKEVEDGLRIRREVINLFERASLPSLPVEEKKKLLSFVIVGGGPTGVEFAAELHDFVHEDLHKLYPSLVEHVKIILLEAGDHILNMFDKRITEFAETKFKRDGIDVRLGSMVVKVGENEITAKERGTGQVVSIPHGMVVWSTGIGARPEILEFMKQLGQVNRRALVTDEWLRVEGCDNIYALGDCATINQRKVMEDIAVIFSKADKNNSGRLDLKEFHDVVDDIIERYPQVDIYLKKNQMKDMATLLNQSRETSAMVDIEYFKEALSKVDSQMKNLPATAQVAAQQGTYLADCFNRMELCERYPEGPLRFRGTGRHRFRPFRYKHFGQFAPLGGEQTAAQLPGDWISIGHSTQWLWYSIYTSKLVSWRTRALVVSDWTRRFIFGRDSSQI. 573
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04340 572 Pfam Pyridine nucleotide-disulphide oxidoreductase 52 376 IPR023753 GO:0016491
Seca3g04340 572 SUPERFAMILY FAD/NAD(P)-binding domain 51 270 IPR036188 -
Seca3g04340 572 Gene3D - 43 395 - -
Seca3g04340 572 Gene3D - 449 571 - -
Seca3g04340 572 SMART efh_1 378 406 IPR002048 GO:0005509
Seca3g04340 572 ProSiteProfiles EF-hand calcium-binding domain profile. 374 409 IPR002048 GO:0005509
Seca3g04340 572 SUPERFAMILY EF-hand 368 458 IPR011992 -
Seca3g04340 572 ProSitePatterns EF-hand calcium-binding domain. 387 399 IPR018247 -
Seca3g04340 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 54 73 - -
Seca3g04340 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 218 236 - -
Seca3g04340 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 157 175 - -
Seca3g04340 572 PRINTS FAD-dependent pyridine nucleotide reductase signature 346 368 - -
Seca3g04340 572 PANTHER NADH DEHYDROGENASE 44 572 IPR045024 GO:0003954|GO:0006116
Seca3g04340 572 SUPERFAMILY FAD/NAD(P)-binding domain 211 371 IPR036188 -
Seca3g04340 572 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 43 403 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04340 Seca-Chr3 84531973 84536348 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04340 1 572 Chloroplast and Mitochondria Gene Families AT4G21490 67.698 0.0 805
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04340 K03885 - gmx:100820044 999.964