Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04339 ATGACGGTTTCTTCCTTCTTCAACAGAGTCTCCAGAGCTCTCAACAGCTCTCCTTCCTACTCCAAACTTGTGCTTCTCTGCACTCTCAGTGGTGGAGGTGTGGTGGCATACTCAGAATTACAATCAGAAGCTGAACGCCCTAGTGTTGATGTTAATGAGCCCTCGAAAAAGAAAGTGGTGGTTCTTGGAACAGGATGGGCTGCTACCAGTTTCCTTAAGGGTCTGGATGCTTCATTATATGATGTTCAGGTTGTTTCGCCTCGTAACTACTTTGCATTTACTCCCTTATTACCCAGTGTCACCTGTGGGACAGTTGAAGCACGGAGCATTGTAGAGCCAGTCCGAAACATCATCAAAAAGAGAAAAGGAGAAATAAAATTTTGGGAGGCAGAATGTCTGAAGATTGATGCTGCAAACAAAAAAGTTTTTTGTCGATCCAATATTGACAACTTAGTGGGAAGTGGTGAATTTTCTCTAGACTATGACTTATTGGTTATAGCAGTAGGAGCACAAGTAAATACTTTTAACACCCCCGGTGTCAAGGAGAACTGTCATTTTCTGAAGGATGTTGAGGATGCTCAGAAGATCAGATTGTCTGTGATAGATTGTTTTGAGAAAGCTGTTCTTCCTAGTCTATCTGAAGAAGAGCGAAGGTCAAATCTTCATTTTGTAATTGTTGGAGGAGGTCCAACTGGTGTTGAATTTGCTGCAGAGCTGCATGATTATGTCCAAGAAGATTTAATCAAACTATATCCAACCGTTAAAGATATAGTAAAGATAACATTGGTTCAATCAGGAGATCACATCTTGAACATGTTTGATGAAAGAATAAGTTCATTTGCTGAGCAGAAGTTTACGAGAGATGGTATAGAAGTTCAAACAGGATGCCGGGTTGTCAATGTTAATGACAAGGAAATTACAGTGAAGGTGAAATCAACTGGAGAGATTTGCTCTGTGCCCCATGGATTGATTGTCTGGTCGACTGGCATTGCAACACTTCCAGTTATAAGGGACTTAATGGAAGAAATTGGTCAGGCTAAAAGGCATGTACTAGCAACAGATGAATGGTTGCGAGTGAAGGGATGTGGAGATGTATATGCTATTGGTGATTGTTCTACAATAATTCAACGTAAAATCATGGATGATATCTCAGATGTATTTAAGGCTGCAGACAAAAATAACTCTGGTACCTTGACCGTTGAAGAATTCAAGGATGTGATGGATGATATTATCTTAAGATACCCACAAGTTGAACACTATCTGAAGAGTAAACATCTACTTGATTTGAGCATAATGTGGAAAGATTCACAAGGGAATGAAAGAAAAGAAATAGACATAGAAGGATTTAAGCTGGGCCTTTCTCATGTAGATTCACAGATGAAGAGTCTACCAGCAACTGCACAGGTTGCTGCCCAGCAAGGTGCATATCTAGCTCAATGCTTTAACCGCATGGATCATTGTCAAGAGCATCCTGAAGGTCCTCGACGATTTACAGGATCTGGACGTCATAATTTTCTTCCCTTTCGGTATAAACATTTTGGGCAATTTGCTCCACTGGGTGGGGAGCAGGCAGCAGCAGAACTTCCTGGAGACTGGGTTTCTATTGGTCACAGCACTCAATGGCTTTGGTATTCTGTATATGCAAGCAAGCAAGTGAGCTGGCGCACAAGGTTTTTGGTCATATCTGATTGGACAAGAAGATTCATATTTGGGAGGGATTCAAGCCGAGTTTAA 1734 0.4123 MTVSSFFNRVSRALNSSPSYSKLVLLCTLSGGGVVAYSELQSEAERPSVDVNEPSKKKVVVLGTGWAATSFLKGLDASLYDVQVVSPRNYFAFTPLLPSVTCGTVEARSIVEPVRNIIKKRKGEIKFWEAECLKIDAANKKVFCRSNIDNLVGSGEFSLDYDLLVIAVGAQVNTFNTPGVKENCHFLKDVEDAQKIRLSVIDCFEKAVLPSLSEEERRSNLHFVIVGGGPTGVEFAAELHDYVQEDLIKLYPTVKDIVKITLVQSGDHILNMFDERISSFAEQKFTRDGIEVQTGCRVVNVNDKEITVKVKSTGEICSVPHGLIVWSTGIATLPVIRDLMEEIGQAKRHVLATDEWLRVKGCGDVYAIGDCSTIIQRKIMDDISDVFKAADKNNSGTLTVEEFKDVMDDIILRYPQVEHYLKSKHLLDLSIMWKDSQGNERKEIDIEGFKLGLSHVDSQMKSLPATAQVAAQQGAYLAQCFNRMDHCQEHPEGPRRFTGSGRHNFLPFRYKHFGQFAPLGGEQAAAELPGDWVSIGHSTQWLWYSVYASKQVSWRTRFLVISDWTRRFIFGRDSSRV. 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04339 577 SMART efh_1 382 410 IPR002048 GO:0005509
Seca3g04339 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 48 407 - -
Seca3g04339 577 FunFam External alternative NAD(P)H-ubiquinone oxidoreductase B1, mitochondrial 424 576 - -
Seca3g04339 577 Pfam EF hand 383 408 IPR002048 GO:0005509
Seca3g04339 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 161 179 - -
Seca3g04339 577 PRINTS FAD-dependent pyridine nucleotide reductase signature 222 240 - -
Seca3g04339 577 SUPERFAMILY FAD/NAD(P)-binding domain 217 375 IPR036188 -
Seca3g04339 577 ProSiteProfiles EF-hand calcium-binding domain profile. 378 413 IPR002048 GO:0005509
Seca3g04339 577 SUPERFAMILY EF-hand 335 464 IPR011992 -
Seca3g04339 577 ProSitePatterns EF-hand calcium-binding domain. 391 403 IPR018247 -
Seca3g04339 577 PANTHER NADH DEHYDROGENASE 52 577 IPR045024 GO:0003954|GO:0006116
Seca3g04339 577 SUPERFAMILY FAD/NAD(P)-binding domain 56 274 IPR036188 -
Seca3g04339 577 Pfam Pyridine nucleotide-disulphide oxidoreductase 57 375 IPR023753 GO:0016491
Seca3g04339 577 Gene3D - 47 408 - -
Seca3g04339 577 Gene3D - 443 577 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04339 Seca-Chr3 84524326 84531204 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04339 1 577 Chloroplast and Mitochondria Gene Families AT4G21490 64.089 0.0 764
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04339 K03885 - gmx:100793566 1025.77