Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04322 ATGGTGATCCATAAAAATGTCACGAATGAGAATGAAGGGTCATCAAAAGAAGAGGAGAATGATAATAAGGTGAAAGAGAAAATGAAGAAAGGGTCGTGGACGGCAGCTGAAGATGCTATATTGAGAGAATATGTGATGAAGAATGGTGAGGGAAACTGGAACTCGGTGCAGAAGAATTCAGGGTTGGGAAGGTGTGGAAAAAGTTGCAGGTTGAGATGGGTAAACCATTTAAGGCCTAACTTAAGTAAAGGTCCATTTTCAAATGAGGAAGAGAAAATCATCATCCTTCTTCATGCTAAACAAGGAAACAAATGGGCTCAAATGGCCGCACAGGTATTACCTGGGAGAACAGACAATGAAATAAAAAACTTCTGGAATACCAGAATGAAAAGGTGCCAAAGAGCAGGATTGCCTCTTTATCCTCCAGAAATCCTTAATGAAGCCAACACATTCCATATACAGAAGAAGGAGTACTTTACACAACTCCAATCTTCCTCATCCTTATCATTTTCTCCATTCCTATCTTCGAATCCCCAAGAAAAGGAACTCAATTCCAATTCTTCTTGCTACACCAATCCATACCCTCAGTTCAATTTTACCAATATGAAGAGTGGATATTCTGAAAACATGGTTTTCCCATCATCCTCTGTTTCTCCACATGGGTATCCTTTGCTCAACCAGTGTTTTGCCGCAAACGAGTCAAGTGGTTATCACTCTGGGAGCTTCAATCATGGTTTTGAATTTGATACCAGTACTGCCATGGGAGGATCCCCATATGAATCTCTTCCTCTGGTGCAATGCTCAAACACTGAAGCTTGTTCGAGCCAATCAGCACCTGAATCCACCACCCCTGCTTCATCCAACGCTAGTGGTGTTTATGGCTTTATGGGAGGTTCAAGCATGGCCAATGGCTATCATGAAGTTGCATCATTATCACCTAATAGAAATAGTGGCCTTCTGGATGCTCTAGTGATGGAGGCTCAAAGCCTTTCTCGCAATGATAACAAGTCAAAGAGTGAGTGTGAGGATTCAACTACAGCAAAAGGAGAGTTATCTTGTAAGAGGAAAAACATGGTAGATGAGGAATATGACGAAGTGCTTGTGGAGACAACTATGGAGAACAATGACAGCAATACTAATAAGAAACAAAGGGTTGATAAAGCGAAGAAACCAATTGTTGAGGAGGATTCTGTGGATGATGACTTATTTAGTCTGCTCAACAACTTTCCGTTAGAAATGCCAGTGCCTGGATGGTACCGTGGTGGAGAAAGACAATCATTGGGACTTGAAACTCAACAAGATCCTTCATCTTCATCTGGCCCTAGAGATGAGGAATTGGCTTGGACTCTTGGTACTTTTTGGAGCAATATGCCTAACATGTGCTAA 1386 0.4163 MVIHKNVTNENEGSSKEEENDNKVKEKMKKGSWTAAEDAILREYVMKNGEGNWNSVQKNSGLGRCGKSCRLRWVNHLRPNLSKGPFSNEEEKIIILLHAKQGNKWAQMAAQVLPGRTDNEIKNFWNTRMKRCQRAGLPLYPPEILNEANTFHIQKKEYFTQLQSSSSLSFSPFLSSNPQEKELNSNSSCYTNPYPQFNFTNMKSGYSENMVFPSSSVSPHGYPLLNQCFAANESSGYHSGSFNHGFEFDTSTAMGGSPYESLPLVQCSNTEACSSQSAPESTTPASSNASGVYGFMGGSSMANGYHEVASLSPNRNSGLLDALVMEAQSLSRNDNKSKSECEDSTTAKGELSCKRKNMVDEEYDEVLVETTMENNDSNTNKKQRVDKAKKPIVEEDSVDDDLFSLLNNFPLEMPVPGWYRGGERQSLGLETQQDPSSSSGPRDEELAWTLGTFWSNMPNMC. 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04322 461 FunFam MYB-related transcription factor 29 82 - -
Seca3g04322 461 Gene3D - 29 82 - -
Seca3g04322 461 CDD SANT 32 77 IPR001005 -
Seca3g04322 461 CDD SANT 85 127 IPR001005 -
Seca3g04322 461 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 11 430 - -
Seca3g04322 461 ProSiteProfiles Myb-like domain profile. 25 77 IPR001005 -
Seca3g04322 461 ProSiteProfiles Myb-like domain profile. 78 129 IPR001005 -
Seca3g04322 461 SUPERFAMILY Homeodomain-like 28 125 IPR009057 -
Seca3g04322 461 MobiDBLite consensus disorder prediction 333 349 - -
Seca3g04322 461 MobiDBLite consensus disorder prediction 10 30 - -
Seca3g04322 461 MobiDBLite consensus disorder prediction 330 349 - -
Seca3g04322 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 25 81 IPR017930 -
Seca3g04322 461 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 133 IPR017930 -
Seca3g04322 461 SMART sant 82 131 IPR001005 -
Seca3g04322 461 SMART sant 29 79 IPR001005 -
Seca3g04322 461 MobiDBLite consensus disorder prediction 1 30 - -
Seca3g04322 461 Gene3D - 85 132 - -
Seca3g04322 461 Pfam Myb-like DNA-binding domain 33 92 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04322 Seca-Chr3 84157590 84160752 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04322 24 144 MYB Transcription Factor Family AT2G32460 78.512 1.29e-60 203
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca3g04322 Myb_DNA-bind_6 4.1e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04322 K09422 - gmx:100784779 411.764