Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04315 ATGGGGGTGATTAAGGCAGCCATTGGAGATGCAATTTTGACATCAATATTTGTTTTCTGTATCGCAAGTATGAGGTTTCTAACAACCAAGACAGCTATTTTTCTTGGTCTTCAACCTGTTTCACTTGCAGGCCTCTTCATCACCACCATCATAAACACAATCATTGTCCTAACCATAAGCTTAATTGGCAGGCTCTTAGGTGGTGCTAGCTTCAACCCCTCAAGCACTGTTTCCTTCTACACCGTAGGACTCAGGCCTGATTCATCTCTTGCAACCATGGCTGTTAGATTTCCTGCTCAGGCAGCAGGTGGAGCTGTTGGAGTCAAGGCTATTCAGCAAGTGATGCCAACTCAGTACAAGCACTTGCTGAAAGGACCTTCCTTGAAGGTGGATTTGCATACAGGAGCTATAGCAGAGGGGGTGTTGAGTTTTACTCATAACTTAACTATCCTCTTTATCATGCTTAGGGGTCCTAAAAACCCATGGTTGAAAGTGTATTTGCTTTCTGTGGCAACGGTGATTTTGGTTATTCCAGGTTCTGTGTACACAGGGCCTTCCATGAACCCAGCCAATGCCTTTGGATGGGCCTATTTGGACAACAAGCACAATACTTGGGAACAATTTTATGTCTATTGGATATGTCCTTTATTAGGTGCAAGCTTAGCTGCTTTGGTATACAGGTTTCTATTTATGTCACCAACTAAGCAGAAGAAAGCATAA 720 0.4333 MGVIKAAIGDAILTSIFVFCIASMRFLTTKTAIFLGLQPVSLAGLFITTIINTIIVLTISLIGRLLGGASFNPSSTVSFYTVGLRPDSSLATMAVRFPAQAAGGAVGVKAIQQVMPTQYKHLLKGPSLKVDLHTGAIAEGVLSFTHNLTILFIMLRGPKNPWLKVYLLSVATVILVIPGSVYTGPSMNPANAFGWAYLDNKHNTWEQFYVYWICPLLGASLAALVYRFLFMSPTKQKKA. 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04315 239 Pfam Major intrinsic protein 4 226 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g04315 239 Coils Coil 237 239 - -
Seca3g04315 239 Gene3D Glycerol uptake facilitator protein. 2 238 IPR023271 -
Seca3g04315 239 PANTHER AQUAPORIN SIP1-1 1 238 IPR044222 GO:0015250
Seca3g04315 239 SUPERFAMILY Aquaporin-like 2 233 IPR023271 -
Seca3g04315 239 PRINTS Major intrinsic protein family signature 92 111 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g04315 239 PRINTS Major intrinsic protein family signature 209 229 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g04315 239 PRINTS Major intrinsic protein family signature 169 191 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g04315 239 PRINTS Major intrinsic protein family signature 5 24 IPR000425 GO:0015267|GO:0016020|GO:0055085
Seca3g04315 239 PRINTS Major intrinsic protein family signature 52 76 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04315 Seca-Chr3 84003154 84003873 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04315 1 230 Major Intrinsic Protein MIP AT3G04090 45.690 1.63e-59 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04315 K09875 - gmx:100797126 344.739