Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04309 ATGTGTAAATTAAAATTATCAGCAGGGAAGGAGAAGCAGCCGGGTGATGCCGTTGGGGAAGTTGAAACTAATGGCCAGGGCAGCAATGATACCGATGAAGACGTTTGTCATATATCTTCAAATTCCGATTCCGATTTTGAAGATGAAGACTTTGGTGGGAACCTCCCTTTTGACTTGAATCAAGACCCGACTTCAAGCTTTTGTGCTTCTGATGGAGAAGATTATGCTTCTGATTCATCTGATGGTAGCAAGCCTTTATCTAAAAGGAGGAAGGCACAGTCCAGAAAGAAAAGAAACAAGCTCAACACGAACAATGAAGAACTGAGTGATGTAGAAGGAATGATGGAGGATGAGGTTGAGGAATCTTTAATGGTTTTAAATCAAGAAGTTCCCATCAATTCGAATAAGGTGCAAAAGAAGAGAAAAGCAAGAAAAACAAGAAAGGGAAATTCTCGGCCAGTGTTATTATGGAATGCTTGGGAAGAGGAGCAAAAGAGATGGATTGATCAGAAATTGTCAGAAGATGTTAACTTAGATAATCACAGTGAAGTGATGAATGAAACTGCTGAGGCATCCTCAGATCTGACTATGCCTTTGCTACGGTACCAGAGGGAATGGTTAGCCTGGGCTTTGAAACAGGAAAATTCTGACACTAGAGGAGGAATCCTTGCTGATGAAATGGGAATGGGAAAGACTATTCAAGCAATTGCCCTCGTCCTTGCCAAACGTGAATTCCATCAAATGAGTTGTGAACCAGATGCACCCTCACCTTCACCAGGGTCACCAGGGTCATCTAGAGTCTTGCCTGCAATCAAAGGAACACTTGTCATTTGTCCTGTGGTTGCAGTTACTCAGTGGGTTAGTGAGATTGATCGATTTACTTTGAAAGGAAGCGCCAAGGTGCTGGTTTATCATGGGGCAAAGAGAGGGAAGAGTGTTGAACAGTTCTCAGAGTATGATTTTGTAATAACAACATACTCTATTGTTGAGTCTGAGTACAGAAAGCATGTGATGCCTCCTAAGGAGAAATGCCCATATTGTGGAAAATTATTTTACCAAAATAAGTTACCTTATCACCAGAGGTATTTTTGTGGGCCTTATGCTATTAGAACTGAAAAACAATCAAAACAAACTAAGAAAAAGAAAACAGAAGTAACTAAACAGAAGATCAAAGTCCCAAAGCGTGGGAATGGAGAGTTGGAGCAGGGTGAAGAGGAAATGCGCTCCAGAGTAGAAGACTCAGACACAATAGGCAGAGAGACGTCATTTCTACATGCTGTAAAGTGGCAAAGGATCATATTGGATGAGGCACACTATATAAAATCTAGACATTGCAACACTGCAAAAGCAGTTCTTGCTTTAGAGTCTTCCTACAGATGGGCATTAAGTGGCACACCCCTTCAGAACCGTGTTGGAGAGCTATATTCTCTGGTACGGTTTCTGCAAATAGTTCCTTATTCCTATTACTTGTGCAAGGATTGTGATTGCAGGGTACTTGATCATAGCTCCTCTAAACAATGTTCAAACTGCTCCCACAGTTCTGTTAGACATTTTTGTTGGTGGAACAAATATATAGCAACACCAATTCAATCACGTGGATATGGCGATTCTGGAAGAAGAGCCATGATATTGCTTAAACACAAAATTTTAAGGAACATAGTTCTAAGGCGCACTAAAATAGGCAGGGCTGCTGATCTTGCACTCCCGCCTAGAATTGTTTCATTGAGGAAGGATAGCCTAGATATAAAAGAGCATGACTATTATGAATCGTTATACAATGAAAGTCAGGCACAGTTTAATACATATGTCGAAGCAAATACTCTGATGAATAATTATGCTCATATATTTGACCTCCTCACACGACTTCGTCAGGCTGTTGACCATCCATATCTTGTGGTATATTCTCCAACTGCAGCATTAAAAGGAGGGAACTTGGCTAGTACTGGCAATGTTGAACAAGCATGTGGCCTTTGTCATGAGGCAGTTGAAGATCCTGTGGTTACCGCATGTGAGCATATTTTTTGCAAGGGATGTTTGATAGACTTTTCTGCTTCCTTGGGACGAATATCATGCCCCTCATGCTCTAAATTACTTACAGTTGATCTAACTTCCAACAAAGATGGTGCAGTTCAGGCTAATAATAAAACAACTATTAAAGGTTTCAGATCCTCGAGCATTTTAAATAGAATTCAGCTTGAGAACTTTCAGACAAGTACTAAAATAGAGGCATTGGTATGTATCATAAATCTGTTTCATGATATATATTTTTTTTGGTTTCTTGATGCTTGGCAAGTATGA 2298 0.4025 MCKLKLSAGKEKQPGDAVGEVETNGQGSNDTDEDVCHISSNSDSDFEDEDFGGNLPFDLNQDPTSSFCASDGEDYASDSSDGSKPLSKRRKAQSRKKRNKLNTNNEELSDVEGMMEDEVEESLMVLNQEVPINSNKVQKKRKARKTRKGNSRPVLLWNAWEEEQKRWIDQKLSEDVNLDNHSEVMNETAEASSDLTMPLLRYQREWLAWALKQENSDTRGGILADEMGMGKTIQAIALVLAKREFHQMSCEPDAPSPSPGSPGSSRVLPAIKGTLVICPVVAVTQWVSEIDRFTLKGSAKVLVYHGAKRGKSVEQFSEYDFVITTYSIVESEYRKHVMPPKEKCPYCGKLFYQNKLPYHQRYFCGPYAIRTEKQSKQTKKKKTEVTKQKIKVPKRGNGELEQGEEEMRSRVEDSDTIGRETSFLHAVKWQRIILDEAHYIKSRHCNTAKAVLALESSYRWALSGTPLQNRVGELYSLVRFLQIVPYSYYLCKDCDCRVLDHSSSKQCSNCSHSSVRHFCWWNKYIATPIQSRGYGDSGRRAMILLKHKILRNIVLRRTKIGRAADLALPPRIVSLRKDSLDIKEHDYYESLYNESQAQFNTYVEANTLMNNYAHIFDLLTRLRQAVDHPYLVVYSPTAALKGGNLASTGNVEQACGLCHEAVEDPVVTACEHIFCKGCLIDFSASLGRISCPSCSKLLTVDLTSNKDGAVQANNKTTIKGFRSSSILNRIQLENFQTSTKIEALVCIINLFHDIYFFWFLDAWQV. 766
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04309 765 Gene3D - 201 344 IPR038718 -
Seca3g04309 765 Gene3D - 368 577 IPR038718 -
Seca3g04309 765 Pfam Zinc finger, C3HC4 type (RING finger) 655 694 IPR018957 GO:0046872
Seca3g04309 765 ProSitePatterns Zinc finger RING-type signature. 670 679 IPR017907 -
Seca3g04309 765 SMART ultradead3 195 489 IPR014001 -
Seca3g04309 765 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 156 557 IPR027417 -
Seca3g04309 765 CDD DEXDc_SHPRH-like 199 557 - -
Seca3g04309 765 Coils Coil 91 111 - -
Seca3g04309 765 PANTHER TRANSCRIPTION TERMINATION FACTOR 2-RELATED 62 749 - -
Seca3g04309 765 MobiDBLite consensus disorder prediction 375 412 - -
Seca3g04309 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 642 733 IPR013083 -
Seca3g04309 765 MobiDBLite consensus disorder prediction 389 412 - -
Seca3g04309 765 MobiDBLite consensus disorder prediction 1 109 - -
Seca3g04309 765 MobiDBLite consensus disorder prediction 58 73 - -
Seca3g04309 765 Pfam SNF2-related domain 213 632 IPR000330 GO:0005524|GO:0140658
Seca3g04309 765 SMART ring_2 655 694 IPR001841 -
Seca3g04309 765 SUPERFAMILY RING/U-box 652 699 - -
Seca3g04309 765 ProSiteProfiles Zinc finger RING-type profile. 655 695 IPR001841 -
Seca3g04309 765 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 212 484 IPR014001 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04309 Seca-Chr3 83910355 83918972 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04309 109 744 RAD5 or RAD16-like Gene Family AT1G05120 59.660 0.0 781
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SNF2 Seca3g04309 SNF2_N 3.6e-50 CL0023
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04309 K15083 - gmx:100786366 1012.29