Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04302 ATGGAATGGAATAGAGGCCACACCATAGGCCATGGCTCCACAGCCACCGTCTCCCTCGCCACCAGCCACGGCGGAATCTTCGCCGTGAAGTCATCGGAGCTATCAAAGTCAGAGTCTTTACAGAGAGAACAGAGCATTCTGTCTTCTCTATGCTGTCCTTATGTGGTTACATATAAAGGGTGTGACATTACCATGGAGAACAACAAGCTCATGTACAATCTCTTCATGGAGTACATGCCCTTTGGCACGCTTGTTCAGGAAACTCGCCGGCACGGTGGCCGGTTGGAGGAGCCGGTGATTGCATGCTACACAAGGCAAATTCTTCAGGGGTTAGAGCATTTGCATTCAAATGGGTTGGTGCATTGTGACATCAAGGGTGCCAACATCTTGATTGGTGAAGATGGAGCCAAAGTTGGAGACTTTGGATGTGCCAAGAGTGTTACTGATGATGCGGCGGCGATCGGCGGCACGCCGGTGTTCATGGCACCGGAGGTGGCGCGTGGGGAAGAACAAGGGTGTCCTAGTGATATTTGGTCACTTGGGTGTACTGTAATTGAAATGGCAACTTGTGCTTCACCATGGCCTAATGTGGCAGACCCAGTTTCAGTTCTTTACCATATAGCATATTCCGGTGAGGTACCTGAGATTCCAGGGTTTCTATCAGAGGAAGCAAAGGATTTCTTGGGGAAGTGCTTTAGAAGGAATCCAGAAGAGAGGTGGAGGGCTAGTCAACTTCTGAAGCATCCATTTCTTGGGGAATTATGTTCCAATGCTAAGCAAGTTCTGGAATCTAATTCATGTTCCCCAACAAGTATTCTTGAGCAAGGCTTTTGGAGTTGTGTGGAGGAAGAAGAATCAGAAAGCGTTGGCAATTTGATTCATAGTCATACATTTAGGGATTCACCTGCTGACAGGGTTAGAAGGTTAGCTTTGAGTTCAGGGGAGCCCTGTTGGGCATGGCATCATGATGATGATCATGATGATGGGGATTGGATCACAACTAGAGGCAATGAGGCAAGGGATGAAGTTGATGCTTTTGGCAATTGTCGGTCAGAGACAGGTTCAACTAGTGAAGGGTTGGTAAAACTAAAAAGCAATGTGAAAGATAGGATTAGTGGGCATTTTTGTGAGGGTCACAAATGTAGGGATGCTAATGCTAGTGTTGTAATTAGTAACCTCAATTTTGAGAGAGGCATTGATAAGATGTCACTCCATTCATCAGCATTTGAATTTTTATAA 1239 0.4633 MEWNRGHTIGHGSTATVSLATSHGGIFAVKSSELSKSESLQREQSILSSLCCPYVVTYKGCDITMENNKLMYNLFMEYMPFGTLVQETRRHGGRLEEPVIACYTRQILQGLEHLHSNGLVHCDIKGANILIGEDGAKVGDFGCAKSVTDDAAAIGGTPVFMAPEVARGEEQGCPSDIWSLGCTVIEMATCASPWPNVADPVSVLYHIAYSGEVPEIPGFLSEEAKDFLGKCFRRNPEERWRASQLLKHPFLGELCSNAKQVLESNSCSPTSILEQGFWSCVEEEESESVGNLIHSHTFRDSPADRVRRLALSSGEPCWAWHHDDDHDDGDWITTRGNEARDEVDAFGNCRSETGSTSEGLVKLKSNVKDRISGHFCEGHKCRDANASVVISNLNFERGIDKMSLHSSAFEFL. 413
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04302 412 SUPERFAMILY Protein kinase-like (PK-like) 3 284 IPR011009 -
Seca3g04302 412 Gene3D Transferase(Phosphotransferase) domain 1 2 304 - -
Seca3g04302 412 ProSitePatterns Serine/Threonine protein kinases active-site signature. 119 131 IPR008271 GO:0004672|GO:0006468
Seca3g04302 412 FunFam Mitogen-activated protein kinase kinase kinase 17 2 305 - -
Seca3g04302 412 CDD STKc_MAPKKK 2 251 - -
Seca3g04302 412 Pfam Protein kinase domain 5 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04302 412 ProSiteProfiles Protein kinase domain profile. 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04302 412 ProSitePatterns Protein kinases ATP-binding region signature. 9 30 IPR017441 GO:0005524
Seca3g04302 412 SMART serkin_6 3 251 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04302 412 PANTHER CCR4-NOT TRANSCRIPTIONAL COMPLEX SUBUNIT CAF120-RELATED 3 343 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04302 Seca-Chr3 83656048 83657286 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04302 3 342 MAP Kinase Kinase Kinase AT5G55090 49.167 5.72e-111 333
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Seca3g04302 Pkinase 3.3e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04302 K20716 - gmx:100819665 499.204