Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04301 ATGCCGCCAAATTCCGTTATTCATCCTTTGTTCATGATTTCAAGTATTAATCAATCAAAGAACTCCACCTCAGGTTCATCTTATTTCCCCGTCTTCTCTTCAAACGTTTTGACTCCTTCGTTGACAACTTCACTTATACCATTCTCCTATCCAATGGGAGACACTACTGGTTTTGCGGTTATCTTTTCAAGCTCCTTCCTATCAGAGATTTTGGTGTTGCTTTTTGATTCAAAGCTAAAGGTGACTTTCGTGGATGACGAAGTGGAAATTGGATTTTCTCACATGAATAATGAAGTACATATCGAATCATGTTCCTTTAGTGATATGGAAAATATAGAAAGTGGATATGATAATGATGAAGTAGAGACGCCAATAATTATGACTAAAGAACAAGATGGGTATGAGCCAAAAATTGGAATGATATTTTCAAATGAAGCTGATGCTTTTGAGTTCTATAATAAGTATGTTGAATTCACTGGTTTTACGGTGAGAAAAGGCCAATATCGAAGATTGGAAAACGGAACCATAAGGCAAAGAACATTTGTTTGTGGAAAAGAGGGGTGTAGAAGGTCAAAGGACCCTTCACATGTGAACAAGGTGAATAGAAGAGAAACAAGAACTGGTTGTCCGGCTATGATATGTTTTAAAATTGAAAATGATACTTGGGTTATTTCTAAATTCATTCCAAATTATAATCATGATCTTGTGAAATCTTGTGCACGGCCTATGTTGAGATCACAAAGGCATGTAGATGAAGCATGTCCTAATATGATTGATGATATGGACAACGTTGGCATAAAATTATGTGATATGTATTCATATTTTGTTGAAGTTGCTGGAGGAGCCCAAAATATTGGATTTTTAAAGAATGCTCCTAAGCATCTTTCTCATTATTTGAGAAAACCTGACTTTAAGGTTCTATTCAATAGGCGTCTCTACAATTGTGGATTGGAGCAGGAGCTTGAAGAAGTTTGGGCACATTTGTTCACAGAGACGTTGGTTAGAATTGCAAAAAACTTTGAGTGCAACGAGTCTGCACCTCCTAGAGTAAAGAAACTTACAAGTATGGTTGAACAAGCTGCAAGGGGTGCATTGAAAATTGAAGCAACCAAAATGGCTGAAGATTGCTTAGAGAATGGGTTAAAAAGCTTGGAAAGAATGTTAAGAAATACTAATTTGGGTAATACATCATGTAACAAACCTGCTAAAGTTGATGATGATACTAGTGATGAAGAGAAAAATGAGCATAGTAAATTAATCTCAAGGAAATTGTTAGATCCACAATGTGTTTGGGCAAAGGGGATAACCAATGCTAGACTTAAAATTCAGTTGGAGAAGAAAAGGTGCAAGAAAAGTATATCACAAGGTCATAGTAATTTTCAAGGTGCAAGTCATGTTGATAAAGACAAAGCTTCGAGCACTAGAGCCATAGATTTTAGCACCTTTTCTATACCTTCATTAGCTTCAAGTGCTAGAGCCACAAATTTTAGCATATTTTATACACATTATTATGGGGCAAGACAATATGCGGCTAAGGCTTGTGCTGAAGTCATCAGATGGAGTTATACATGCTTATGTGAGGAGAAGGATAACACTGCTACTGTTATTGTGTTTCTGTTGGCATTCAAGGACTTAGGGGTTGTTGTATTCAACATTGAACTCGGGCTCACTTCAGTGACCTGTTACTGA 1689 0.3665 MPPNSVIHPLFMISSINQSKNSTSGSSYFPVFSSNVLTPSLTTSLIPFSYPMGDTTGFAVIFSSSFLSEILVLLFDSKLKVTFVDDEVEIGFSHMNNEVHIESCSFSDMENIESGYDNDEVETPIIMTKEQDGYEPKIGMIFSNEADAFEFYNKYVEFTGFTVRKGQYRRLENGTIRQRTFVCGKEGCRRSKDPSHVNKVNRRETRTGCPAMICFKIENDTWVISKFIPNYNHDLVKSCARPMLRSQRHVDEACPNMIDDMDNVGIKLCDMYSYFVEVAGGAQNIGFLKNAPKHLSHYLRKPDFKVLFNRRLYNCGLEQELEEVWAHLFTETLVRIAKNFECNESAPPRVKKLTSMVEQAARGALKIEATKMAEDCLENGLKSLERMLRNTNLGNTSCNKPAKVDDDTSDEEKNEHSKLISRKLLDPQCVWAKGITNARLKIQLEKKRCKKSISQGHSNFQGASHVDKDKASSTRAIDFSTFSIPSLASSARATNFSIFYTHYYGARQYAAKACAEVIRWSYTCLCEEKDNTATVIVFLLAFKDLGVVVFNIELGLTSVTCY. 563
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04301 562 PANTHER FAR-RED IMPAIRED RESPONSIVE (FAR1) FAMILY PROTEIN-RELATED 85 285 - -
Seca3g04301 562 MobiDBLite consensus disorder prediction 392 415 - -
Seca3g04301 562 Pfam FAR1 DNA-binding domain 150 236 IPR004330 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04301 Seca-Chr3 83636575 83641213 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g04301 FAR1 3.7e-20 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04301 - - rcn:112203823 141.354