LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g04299	ATGGTTAGAGGTTGTGGACTCTCCATGGATTCAGATCCAATTGGTAGCTTCTTCCTCCACAAGCCAAATGTTCTCAACTCTTTCCCTGAAGACATAAACCACCCCAAGTGGAAACTTAGTCCCAACAACAACATGGTGGAGTCCATAGTTACCACCAATGGCTCTTCTTCACCAACACGCACCAGCACCATCCCCTTCCAAGTCAACCTTAACTGTTATACGGATAATCACACCTCTCTGGGATCTTCTGATGACATGAGAACAGAAATGGACCTCTTCAAGGACAAGGACAACACTGATGACAGGGTTACCTCTGCCTCTGTCTCTGTCCCCAACAATGATCATAAACATGATCATTCTGATAATTCCCCTTTATTGGAATTCCAAGTAAACACTGGTCTGAATCTTCTTACTACAAACACTAGCAGTGATCAATCTATGGTGGACAATGGCATATTACCTAATCCAAGCCAAAAAACTAGGAACGAGGTGTCTGTTCTTCAAGCTGAGCTTGAGCGAACGAAGGTGGAGAATAATCGGTTAAAAGACATGCTTGCGGAGCTTAATAGCAATTACAATGCTCTGCAGATGCATTTGATGAATATGATGCAAGACCAGAAGGTGAAGGAGGGAAAAGAACAGGAAGTGTTTGATGAAAAATTCAAAAAGAAGAAGCAAGATGAGAATGAAGGGGTTTTGGTGCCAAGACAGTTTATGGATCTCGGGTTAGCTACCAATATTGAGACAGATGAACCCTCTTCTTCATCTTTGGGAAGAAGTCAGGACAGAGCAGGATCGGCAGGGAGTAACATAGAAGTGGCTTCCATGGAACTAGGCACAAACAAGAATAATGGGAATCCTAATGATGAAGGAGTTAGGTATGATCAAGAGAAGAAGGAGTTTGATAGGGGGATTGAAAGAGAGGATAGCCCCCAAGATGATAAAATTCCAAGATTAAGTCCTCCAAAAAATGTTGATCAAGCTGAGGCCACCATGAGGAAGGCAAGAGTTTCTGTTAGAGCTAGATCAGAAGCACCAATGATCACTGATGGGTGTCAATGGAGGAAGTATGGACAGAAGATGGCCAAAGGAAACCCATGTCCTCGAGCTTATTATAGATGCACCATGGCTGCTGGTTGCCCAGTTAGAAAACAGGTGCAAAGGTGTGCAGAAGACAGAACAGTGCTCATCACAACATATGAAGGAAATCACAATCACCTTTTACCTCCAGCAGCTATGGCAATGGCACAAACCACATCTTCAGCTGCAAGAATGTTACTTTCAGGATCAATGTCAAGCACTGATGGCTTAATGAATGCAAACTTCCTGACAAGGACACTTCTTCCTTGCTCTTCTAGCATGGCAACAATCTCAGCATCAGCTCCATTCCCAACTGTCACACTTGACCTTACTCAATCTCCAAATCCTCTACAATTCCCAAGGCCTCCAAATCAGTTACAAATTCCCTTCCCTCAGAATTTTGCCAATTCCCCAGCATCTTTAATGCCTCAGATATTTGGTCAGGCACTCTACAACCAATCAAAGTTTTCTGGTCTACAAATGTCACAAGATTCTGCAGCAACAGCAGATCCTTCACAATTGGGTAACCATTCTCAACAGCCACCACCAAACCTTGCTGACACAGTTACTGCTGCCATTGCTTCTGACCCAAACTTCACTGCAGCTTTAGCAGCAGCTATTACTTCCATTATTGGTGGTGCTCAGCCAAACAACAACAGTAGTAATACTACTAACAATAATGGCAATAACAATAGCAATGGGAAGCAATAA	1791	0.4322	MVRGCGLSMDSDPIGSFFLHKPNVLNSFPEDINHPKWKLSPNNNMVESIVTTNGSSSPTRTSTIPFQVNLNCYTDNHTSLGSSDDMRTEMDLFKDKDNTDDRVTSASVSVPNNDHKHDHSDNSPLLEFQVNTGLNLLTTNTSSDQSMVDNGILPNPSQKTRNEVSVLQAELERTKVENNRLKDMLAELNSNYNALQMHLMNMMQDQKVKEGKEQEVFDEKFKKKKQDENEGVLVPRQFMDLGLATNIETDEPSSSSLGRSQDRAGSAGSNIEVASMELGTNKNNGNPNDEGVRYDQEKKEFDRGIEREDSPQDDKIPRLSPPKNVDQAEATMRKARVSVRARSEAPMITDGCQWRKYGQKMAKGNPCPRAYYRCTMAAGCPVRKQVQRCAEDRTVLITTYEGNHNHLLPPAAMAMAQTTSSAARMLLSGSMSSTDGLMNANFLTRTLLPCSSSMATISASAPFPTVTLDLTQSPNPLQFPRPPNQLQIPFPQNFANSPASLMPQIFGQALYNQSKFSGLQMSQDSAATADPSQLGNHSQQPPPNLADTVTAAIASDPNFTAALAAAITSIIGGAQPNNNSSNTTNNNGNNNSNGKQ.	597

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g04299	596	MobiDBLite	consensus disorder prediction	291	320	-	-
	Seca3g04299	596	MobiDBLite	consensus disorder prediction	521	545	-	-
	Seca3g04299	596	ProSiteProfiles	WRKY domain profile.	343	409	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca3g04299	596	Gene3D	WRKY domain	333	410	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Seca3g04299	596	SMART	WRKY_cls	348	408	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca3g04299	596	Coils	Coil	157	205	-	-
	Seca3g04299	596	Pfam	WRKY DNA -binding domain	350	406	IPR003657	GO:0003700\|GO:0006355\|GO:0043565
	Seca3g04299	596	SUPERFAMILY	WRKY DNA-binding domain	341	409	IPR036576	GO:0003700\|GO:0006355\|GO:0043565
	Seca3g04299	596	MobiDBLite	consensus disorder prediction	248	267	-	-
	Seca3g04299	596	FunFam	probable WRKY transcription factor 31	333	410	-	-
	Seca3g04299	596	MobiDBLite	consensus disorder prediction	276	290	-	-
	Seca3g04299	596	MobiDBLite	consensus disorder prediction	276	342	-	-
	Seca3g04299	596	PANTHER	WRKY TRANSCRIPTION FACTOR 36-RELATED	136	584	IPR044810	GO:0003700
	Seca3g04299	596	MobiDBLite	consensus disorder prediction	574	596	-	-
	Seca3g04299	596	MobiDBLite	consensus disorder prediction	94	124	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g04299	Seca-Chr3	83619421	83621920	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g04299	89	585	WRKY Transcription Factor Family	AT1G62300	48.842	1.69e-128	387

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	WRKY	Seca3g04299		WRKY	6.7e-24	CL0274

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g04299	-		-	gmx:100127384	687.182