Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04275 ATGGATCGGTCAAAGCATTCCAAAACTGTGCTCATTATGGATGAGGTTGATGGGATGTCAGCTGGTGATAGGGGTGGTATTGCTGATCTTATTGCTAGCATCAAGATATCAAAAATTCCTATTATCTGCATTTGCAATGACCGCTACAGCCAGAAACTGAAAAGCCTTGTGAACTACTGTTTGCTTCTTAGTTTTCGGAAGCCTACAAAGCAACAGATGGCTAAGAAGTTGATGGATGTTGCAAAGGCTGAAGGGCTTCAAGTGAATGAGATTGCTCTTGAGGAACTAGCAGAAAGAGTTAATGGAGATATGCGCATGGCACTAAACCAGTTACACTATATGAGCCTCTCCATGTCAGTTATCAACTATGATGATATTAGGCAGCGCTTCCTTACCAATGCAAAGGATGAAGACATTTCACCATTCACAGCTGTTGATAAGCTTTTTGGTTTTAACGGTGGAAAGTTGAAAATGGATGAAAGAATTAGTCTTAGCATGAGTGATCCAGATCTTGTTCCTCTTCTTATCCAGGAAAATTATATTAATTATAGACCTAGCTTGGCTGGTAAGGATGACAGTGGTATAAAACGCATGAACCTGATTGCCCGTGCTGCTGAGTCTATTGCTGATGGGGATATAGTGAACGTACAGATTCGCAGATATCGACAGTGGCAGCTCTCTCAAACTAGTTCTGTTGCATCCTGTATAATTCCTGCTTCATTGTTGCATGGGCATAGGGAAATACTTGAACAGGGAGAACGGAATTTTAACCGGTTTGGTGGGTGGCTGGGGAAGAACTCAACAATGGGAAAAAACATGAGGCTTTTGGATGATCTGCATGTTCACATTCTTGCATCTCGGGAATCTAGTTCAGGAAGAGATACTATTCGCTTGGAATACCTTACTCTTCTCCTTAGACAGTTGACAGAACCTCTACGAGTCCTGCCTAAGGTTGAAGCTGTTCAGAAAGTTGTTGAATTTATGAATACATACTCAATCAGTCAGGAAGATTTTGATACTATAGTCGAGTTATCAAAATTCAAGGGCCATCCTAATCCGCTAGATGGCATACAACCTGCTGTTAAATCAGCCTTGACAAAAGCCTACAAAGAGCAAAGCAAATCTCGGATGGTTCGAGCTGCAGATCTAGTCACTCTTCCTGGTATGAAAAAGGTCCCTAAGAAGCGGATTGCTGCTATTCTGGAACCAGCTGATGAAGGAGTAGAACAAGGTGATGGTGACACCTTGGGCGAGAGTGAAGAAGAGAACACCTCTGACACAGAGGATTTGGAAGGCACCACCACTGGCGAGAAGCTGAAGTCCGAACTACAAAGTTTGAATTCAAAGGCTATGCAAGTACAATTGGAGTTGAAGGGAACGGGAAATTCAAGTTCCAAAAAGACATCCGGTGGTAGAGGTAAAGGTGCTTCTGCATCTGTGCAGAAGGGTGCTCAAACTTCAAGGGCTACTGCAAAAAGAAAGAGGTGA 1488 0.4281 MDRSKHSKTVLIMDEVDGMSAGDRGGIADLIASIKISKIPIICICNDRYSQKLKSLVNYCLLLSFRKPTKQQMAKKLMDVAKAEGLQVNEIALEELAERVNGDMRMALNQLHYMSLSMSVINYDDIRQRFLTNAKDEDISPFTAVDKLFGFNGGKLKMDERISLSMSDPDLVPLLIQENYINYRPSLAGKDDSGIKRMNLIARAAESIADGDIVNVQIRRYRQWQLSQTSSVASCIIPASLLHGHREILEQGERNFNRFGGWLGKNSTMGKNMRLLDDLHVHILASRESSSGRDTIRLEYLTLLLRQLTEPLRVLPKVEAVQKVVEFMNTYSISQEDFDTIVELSKFKGHPNPLDGIQPAVKSALTKAYKEQSKSRMVRAADLVTLPGMKKVPKKRIAAILEPADEGVEQGDGDTLGESEEENTSDTEDLEGTTTGEKLKSELQSLNSKAMQVQLELKGTGNSSSKKTSGGRGKGASASVQKGAQTSRATAKRKR. 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04275 495 Gene3D - 68 138 - -
Seca3g04275 495 MobiDBLite consensus disorder prediction 407 428 - -
Seca3g04275 495 MobiDBLite consensus disorder prediction 401 495 - -
Seca3g04275 495 FunFam Replication factor C subunit 1 68 139 - -
Seca3g04275 495 PANTHER CHROMOSOME TRANSMISSION FIDELITY FACTOR 18 5 466 - -
Seca3g04275 495 SUPERFAMILY post-AAA+ oligomerization domain-like 139 284 IPR008921 GO:0003677|GO:0006260
Seca3g04275 495 PIRSF RFC1 1 470 IPR012178 GO:0003689|GO:0005524|GO:0005663|GO:0006260|GO:0006281
Seca3g04275 495 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 5 128 IPR027417 -
Seca3g04275 495 Coils Coil 436 456 - -
Seca3g04275 495 Gene3D - 140 249 - -
Seca3g04275 495 Pfam Replication factor RFC1 C terminal domain 208 370 IPR013725 GO:0003689|GO:0005524|GO:0005663|GO:0006260
Seca3g04275 495 FunFam Replication factor C subunit 1 140 249 - -
Seca3g04275 495 Gene3D - 1 67 IPR027417 -
Seca3g04275 495 CDD HLD_clamp_RFC 68 126 - -
Seca3g04275 495 MobiDBLite consensus disorder prediction 437 487 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04275 Seca-Chr3 83073975 83083345 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04275 1 450 Core DNA Replication Machinery Family AT5G22010 75.831 0.0 684
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04275 K10754 - gmx:100790070 808.905