Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04273 ATGTCAATGGACATGATGGCAACCGAACGTGTTTGTTATGTTCACTGCAACTTCTGCAACACCATTCTAGCGGTTAGTGTTCCATTCAGCAGTTTACTAACCATAGTGACAGTTAGATGTGGTCATTGTGCCAATTTGCTATCAGTTAATATGGGAGCTTCACTTCAAGCATTTCCTCCTCAAGACCCTCAGATGTCAATTCTTCTCTTGGTAAAGTCACAGAAACAGCACCTAAGTTTTGAAGAATCAAGCAGCAAGGAACTGGGATCATCTTCAAAATGTAACAAACTAGCGGCATTTGAGGCAATAGATCAGCATGAACAACCTAGGATTCCTCCCATTCGTCCTGCGGAGAAGAGACATCGTGTTCCTTCTGCTTATAACCGCTTCATTAAGGAGGAAATCCAAAGGATTAAGGCTAGTAATCCAGATATCAGCCACAGAGAGGCTTTCAGCACTGCAGCAAAAAACTGGGCACATTTCCCTCATATTCACTTTGCAAAGCAAGCAAAGTTGGACCAGGGAGAAGGAACTGAAAAGTCTAATGGATTCTACTGA 558 0.4265 MSMDMMATERVCYVHCNFCNTILAVSVPFSSLLTIVTVRCGHCANLLSVNMGASLQAFPPQDPQMSILLLVKSQKQHLSFEESSSKELGSSSKCNKLAAFEAIDQHEQPRIPPIRPAEKRHRVPSAYNRFIKEEIQRIKASNPDISHREAFSTAAKNWAHFPHIHFAKQAKLDQGEGTEKSNGFY. 186
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04273 185 Gene3D High mobility group box domain 116 174 IPR036910 -
Seca3g04273 185 CDD HMG-box_SF 122 158 - -
Seca3g04273 185 SUPERFAMILY HMG-box 114 162 IPR036910 -
Seca3g04273 185 PANTHER PROTEIN YABBY 6-RELATED 1 171 IPR006780 GO:0007275
Seca3g04273 185 FunFam axial regulator YABBY 5-like 106 164 - -
Seca3g04273 185 Pfam YABBY protein 7 167 IPR006780 GO:0007275
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04273 Seca-Chr3 83006991 83014830 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04273 1 185 C2C2-YABBY Transcription Factor Family AT1G08465 59.184 2.48e-72 214
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-YABBY Seca3g04273 YABBY 9.2e-71 CL0114
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04273 K25796 - gmx:100500091 306.219