Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04271 ATGAGACAGAAGGGACAGTATGGTGATCCATCTGCCAATAGTTATGTTGCTGCCCAGATGCATCATATGGCTGGTCAAAGGGTGGAAACCAAGTCTGGTAATTTTGAGGGACGGCTAGAGGCATTCACTCTGGAGAGGGAGAATACTTATGCAAATTCCAAACCAGAGGGTCATGGGGATGATGCTTCAAGCTCATATTTTCAAGGGCAGAGACCTGATCCTAAGTTGGCTTTGCAGAACAGGAGCAACAGTGATTCCAGATCTCAGGCTCATGAAGAAGATAGAGATGTTGGGTATGAAGGAAGTCATTTATCACTTGAAGGTCTTGAGCAGAATTTTCACGATGTAATTATTAAACTAACCAAAGAACAGCATGATGCTGAAGATGCAGAGCATGCTAGGCACAGAGAGATGAAGACAAAATTGTGCAACACCCTTGATGGATTGAATCCAGACCCTGCTAGGTTAACTGATCTCTCAGGCTTCAGTTCACTGAAATCAGGAAAAAAACATAAAGAACCATTTCGTAAAATAAATGCAATCAATACTCAGTGTGAAGAAAAGTTAGCAGCACTCCGAGCTCGGCATAGCAGCCGAAGAGCTGAATTTCTTCAATGGGAATCACTTACAAGACAACAGCAGTACCAACAAATCATTAGAGATCCTTACTCCAGCAGTGGCATGGCACCCAGAGACCCTCATGATTACAGCAGTGTTAATGCTTCAGCTGCTGGGGGAGAAGTGCAACAAGGCTATTCTCCTGATCACTTTGATCCTCCTTACAGAGAGCGAGCTCGATTTCCTGGAAGTGCAAGAGAGCTGCATGGTTCTCCTTCTTTTGAATCAGTGAATGACGAATTAGGGTCTCCCATGAAACGAGAGTATTACTGTTCTGAAATGGTTAGGTATAATAACAACTGTAGAGGGAACAGTATGGAGTGCGGTCATGAATTCACTCGCACTCCTCCAAAGAAACAGATCCAGAAGAAGAGTGCACTTCTCAGAATCCAGACGGTAAAACCCAGTCATAGAAATCACAATGTTGAACAGTTACGTTATGCTGGCTATGCTCCTGACTCTAACTCTAATTTCTTCAGGAGTAAGGAGCAACATGGGTATATAGGTCATGGGATGAAGGCCGAAGAGAGAGAAGAAAGCCCCATGGAGCTTGATATTTCTTTCGAATCAAACTCTCTGGTGGCCAAGGCTATTGTCGCACCTTCAAGTTTGGGTGCTCCTGTTTCTGATTCGAATTTGACTCCAGTTTCTGACTTGCCGTGCAAAACAAATGATACCTCTAGTGTGGGCAAGGAATTGAGTTTGCAGAAGAATGTAGTTGATACTTCTTCTCAGCCTTGTGCTGGTAATCCTCGTGGGAAAAATGAGGTGGCAGTTTCAGTTGAAGTTGCTGATATGTGTTCTGGTAAATCGACCCCTAGGACTATCAAGAAGAAAAAAATTGTTAAAAGAGTGGTGAAGAAAACTGTTGTGAACCCTAATTCAACTGTGTCAAGTTCACTATCTGAGAATATGCAGCATGGAACTGTGCAAGCAGATAGTGTCAAACTCAGTTCATCAACTACCCTTGGTCCTGACAAAACTGAGACTTGTTTGGATGAGAAAAGCACCAGTGTTGACAAGGTGTCTGTGCCAGAAGGGAATTTGTTGACTGAAGACAAAAAAGGAGATCTATCCCTGCCATGTTTGGGGCCAGATTGCAGGTCACAGGAATGTAAGACTGATAAAGCTTCTGATATTAGGAAAGTATCCAGGTTTGAAAGAGGAGGGAACATTTCAAATTCTCCATCTTGTTCTTCTAGTAGTGAAGGTAAAAAGAGTGGTGCTGATTGTTTAGATGCAAATAATTCTGTCCATGACTTGCTTTGCATGCCAAATACTGAAAAGGTTACTGATTCATTAAATGTCAGTACTTCTTCTGAAATCAATTACATGGATTATGATAATAAGCAATTATGTCAGAATGAAGCGTCTGTATCACCTGGGAAACTTTCAAACATTGGATGCCCAGAGAATAGAAATCTTGTAGATGTAGGAGATGAAATGAGTCGTAAATTGTTTAGTTCAACTGACAGTGTCTTTTCCACAGATCTTATAGATGCACGTAATTCTTCCGATAACAGGGTTTGTGGCTTCAATAAGAATGATCTTACAGGTTCAGAAGAGAATTTAATTGTTACTGGCGATGGGAATAATGGCACTGTCAGTAAGGCATATTATGAAAATATGGCCCCTACAATAACTCAGAGTGCTATTTTAGAAGAAAAATTGGATATAGCCATCCCTCTGCAAATCAGTGGAAATGTTGCTTTTTCAAGTTCAGAAAATACTATGATCCCTCTACAAAGCAGTGTAATTGTTTCCTTTTCAAGTTCAGGAAATACTAGGATTCAGGATGGTCTAGGTTGCCTACAACATGCCAGTGTTCTGAAGCCAGGTTCTGATAATGGATCATCTAATTTAGAAGATAGTATCACTGTTCACCATTTTGGTATCATGAAAGATGATAAAGATGACAACAATGATTCACCACTTTCTAAAAGGAAAAAAGTCACTGCTAGTCACAAAAGTTTTTCTCAATGTCAATCTGAATTCAGTGATGCAATTGTGGCTACCACATCTAATGCAGAAGTTCCTATCAGTTTTAGTGACAACCAAGCACATCAGAAAGAAAAAGTTGTATTGTCGAGCATGAGTATTCTGTCTATTGCTCAGTCAAGGCCTTATTCAGAGGATATTGCTAAATTGTCTGACAGTATTTTGGCTGCCGGGTCTTTTGAGTCTATGGATGCAAATAAGGAAGGCATGATTTCTGAGCATTTGGAATTGCAGCACTCAGATATTGTCTCAAATTCACTGTGTGAGGGCTTGGCCTTTCCAAATGTTCAGTTCTCAGTGTTGGAACCTGAGCAGAAAGAAAATATTACTCCAATTGTGCCAGTAAGTAATACTGAAACTGACATTTTGGTTGTTGGAAACATAAAGGATGAAAAGATTGATTTACAGACTAGTAAAGAAAATTACGGGTATAAAGACTTTGTGCGAAGGTCTCCAAGGGCTGATATGGAATCTAATGATTTCAATGTGAAGGATGATTTACATACTCATCAGAACTTTATATCCTGCCCAGCTGATGGTGATGGAGTCACTACCAGTAATTCAAATGGTGAATTGATTGAGGATTTACCTGATGCTTTATTAGATATGTGTTCTCAAGGGATGACATCTGAAGTACCTGATAAAAGGAATATAGAACATACAGCAATCCATGATGAAAACATTTGTGGGGATGAAGAACATCTGAATAACATATCTGTGGTTGAAAATGGTTCTGAGTCTGACTTACATACTTCATCAATACAGGATACTAAAAAAGTTATGAAGTCAGAACATGCAATTGGACATAGTAACCCAATAATAAGGAATATAATGCCAGAACAATCCCAAGTTTATTCCAAAGTTACAACTAAGGGTATAAAATCATATTGTTCAGAAAAAAATGGGAGCAAAAATCAGCCAGGTGGTGTCATTCATAAAACTTTCCAAGGTCATTCTTTCACCTTTTCAAAGTCAAAGACAAGGACATCTGCCTCTTCAACCCATATTTCAAAACCTCGAACTTGGCATCGTTCAGGTAATAATCCTCCCACTTCTCTACCTAGAATCAAGCCTTTGGTAGGAACAGTTCCTCCAAAAAGGCCCATTCTAGAAAGGAAAGGGAACTTCCAAAATACCTCTTACATTCGTAAAGGTAACAGTCTAGTAAGGAAACCCACTCCAGTTTATGCTTTACCTCAAATCTCCTCTGCTAATCAGTCACCTTTGGACTTAAATGAAATACAAAAGAGCGCCACATCTGAAGGCCTGGCCGATGTGACAGATCAACCAATCTACTTGAAAACAGAAGCAAATGCTCCTCAGAAAAGACAGACAACCCCGCCACTGCCCATTGACTCCAAATCAGAGGAAAATATATCTTCCCCATTGGTAGAACCTCCTTCCAGTGGCTGCTGTGAAAATGCATCAGATACTAGGAAATTTATAGAAACTAATGATGCACCAAACTCTTCTGAAGATGTGCCGAAGCATTATGAAACTCCTGAAAATCAAACTGGTCCATCTAACAATGGGGAGAGCCAAGTTGAGACAAATGATGGGAATAATTCTTCTTTGATCACTAAGAGAATAGTATATATAAAGCCCAAAACAAATCAGTTGGTTGCAGCTTCAAATTCTTGTGATGTTATTATCTCTACTGATGACAAGGGCCAGACAGCCTTCTCCGATGGCTACTACAAGAGGAGAAAAAATCAATTGGTTAGGACTACATTTGAAAATCATATCAACCAGACAGCTGCTATGCCTAATAGCACTGTAAATTCTGATGGGCATGGGGCTAGTAAGGTTCTTTGCAACAAGAGGTTTACCAAGAGGCAGTTGAAAAAGGTGGAACAAGACTTGCAAGTTGTGATAGAGGGGTGTGAACAGAGGGTGAGCAGTGGTCTAGGATGGCAATGTATGGTTCAGATTTCATTTGCAGTTGCTGGGAGTTCATGCAAACCTTCAAGAGCCTCATTAGTGTGGACACTTCGTAGCAAAAATTCATCTGAAAATCACAGGGACTCATGGCATTATCAAAATATTTTACCTCACTTGTTTCCATGGAAAAGAGCAACATATTTAAGAAACTTCATTCATAATTCTGCTTCAAGCTACAATAGTAGTTCCTTATCTGCTATCAGCAAGAAATTGCTTCTGTTAAGAAAGAGGGATGCTGTTTACACTAGGTCAACCCATGGGTTTTCTCTTTGGAAATCCAAGCTATTAGGTGTTGGTGGGTCTAGTTTAAAATGGTCCAAATCCATTGAGAAGCACTCAAAAAAAGCTAATGAGGAAGCGACACTTGCTGTTGCTGCAGTTGAGAGGAAGAAGAGAGAGCAGAAAGATGCGGCTTGCATTGGTTCTCAGGCAAAGAGAGAACGTATATTTCGTATTGGTTCAGTTCGCTACAGAATGGATCCTTCCAGGCGGACACTTCAGAGGATTTCAGATGGTGAGTCCCTGTCCTCTTCCTCTCCCTGTTCGAGTTTGGCTTCCAAAAGAACTTATATTCCAAGGAGATTAGTGATTGGAAATGATGAATATGTCCGCATTGGCAATGGTAACCAGCTTATCAGAGACCCAAAGAAACGAACTAGAAAATTGGCAAATGAGAAAGTCAGATGGAGCTTGCACACTGCCAGACAGCGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTCACAAGATTTGGGAAATGTAACAAGGATGGAGGGAAGTGTCCTTATATTCACGATCCTTCAAAAATCGCTGTCTGTACTAAGTTCCTAAATGGTTTATGTTCTACTCCCAAGTGCAAATTGACTCATAAGGTGATTCCAGAGAGAATGCCAGACTGTTCTTATTTTTTGCAAGGATTATGCTCAAACAGAAATTGCCCATATAGACATGTCAATGTGAACCCTAAGGCATCTGCATGTGAAGGATTTCTTAAGGGTTATTGTGCTGATGGGAATGAGTGTCGGATGAAACACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAACCTGTACTCAAGGAACAAAATGCAAGCTTCACCACCCCAAAAAACAAAGCAAGGGAAAGAAAAGAAAGAGATCTGGAGATCAGAACAGTAGCGGGCGTTACTTTGGTTCTATTCCCGTTGATATTGCTGAACCTGGTATGCTGATGCCTCCAAGGCAACATCAACGGAAGGATGGCCTTGAAAATGAACATTCCGATTACATAAGTCTTGATGTGAATGAAGAAGTTAAAGACACCGTTGATCAATCATTTGAGCAGTCAACAACATTTTGTGACAATGATTCCTTGGATTTACAGTTGGATACTTCTGATGAACTTATTAAACCGATTCTTCTAATAACAAAATTCACATCGCAATCATCTCAGTCCAGTAGCCTGGAAGTTTAG 6012 0.4032 MRQKGQYGDPSANSYVAAQMHHMAGQRVETKSGNFEGRLEAFTLERENTYANSKPEGHGDDASSSYFQGQRPDPKLALQNRSNSDSRSQAHEEDRDVGYEGSHLSLEGLEQNFHDVIIKLTKEQHDAEDAEHARHREMKTKLCNTLDGLNPDPARLTDLSGFSSLKSGKKHKEPFRKINAINTQCEEKLAALRARHSSRRAEFLQWESLTRQQQYQQIIRDPYSSSGMAPRDPHDYSSVNASAAGGEVQQGYSPDHFDPPYRERARFPGSARELHGSPSFESVNDELGSPMKREYYCSEMVRYNNNCRGNSMECGHEFTRTPPKKQIQKKSALLRIQTVKPSHRNHNVEQLRYAGYAPDSNSNFFRSKEQHGYIGHGMKAEEREESPMELDISFESNSLVAKAIVAPSSLGAPVSDSNLTPVSDLPCKTNDTSSVGKELSLQKNVVDTSSQPCAGNPRGKNEVAVSVEVADMCSGKSTPRTIKKKKIVKRVVKKTVVNPNSTVSSSLSENMQHGTVQADSVKLSSSTTLGPDKTETCLDEKSTSVDKVSVPEGNLLTEDKKGDLSLPCLGPDCRSQECKTDKASDIRKVSRFERGGNISNSPSCSSSSEGKKSGADCLDANNSVHDLLCMPNTEKVTDSLNVSTSSEINYMDYDNKQLCQNEASVSPGKLSNIGCPENRNLVDVGDEMSRKLFSSTDSVFSTDLIDARNSSDNRVCGFNKNDLTGSEENLIVTGDGNNGTVSKAYYENMAPTITQSAILEEKLDIAIPLQISGNVAFSSSENTMIPLQSSVIVSFSSSGNTRIQDGLGCLQHASVLKPGSDNGSSNLEDSITVHHFGIMKDDKDDNNDSPLSKRKKVTASHKSFSQCQSEFSDAIVATTSNAEVPISFSDNQAHQKEKVVLSSMSILSIAQSRPYSEDIAKLSDSILAAGSFESMDANKEGMISEHLELQHSDIVSNSLCEGLAFPNVQFSVLEPEQKENITPIVPVSNTETDILVVGNIKDEKIDLQTSKENYGYKDFVRRSPRADMESNDFNVKDDLHTHQNFISCPADGDGVTTSNSNGELIEDLPDALLDMCSQGMTSEVPDKRNIEHTAIHDENICGDEEHLNNISVVENGSESDLHTSSIQDTKKVMKSEHAIGHSNPIIRNIMPEQSQVYSKVTTKGIKSYCSEKNGSKNQPGGVIHKTFQGHSFTFSKSKTRTSASSTHISKPRTWHRSGNNPPTSLPRIKPLVGTVPPKRPILERKGNFQNTSYIRKGNSLVRKPTPVYALPQISSANQSPLDLNEIQKSATSEGLADVTDQPIYLKTEANAPQKRQTTPPLPIDSKSEENISSPLVEPPSSGCCENASDTRKFIETNDAPNSSEDVPKHYETPENQTGPSNNGESQVETNDGNNSSLITKRIVYIKPKTNQLVAASNSCDVIISTDDKGQTAFSDGYYKRRKNQLVRTTFENHINQTAAMPNSTVNSDGHGASKVLCNKRFTKRQLKKVEQDLQVVIEGCEQRVSSGLGWQCMVQISFAVAGSSCKPSRASLVWTLRSKNSSENHRDSWHYQNILPHLFPWKRATYLRNFIHNSASSYNSSSLSAISKKLLLLRKRDAVYTRSTHGFSLWKSKLLGVGGSSLKWSKSIEKHSKKANEEATLAVAAVERKKREQKDAACIGSQAKRERIFRIGSVRYRMDPSRRTLQRISDGESLSSSSPCSSLASKRTYIPRRLVIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDGGKCPYIHDPSKIAVCTKFLNGLCSTPKCKLTHKVIPERMPDCSYFLQGLCSNRNCPYRHVNVNPKASACEGFLKGYCADGNECRMKHSYVCPTFEATGTCTQGTKCKLHHPKKQSKGKKRKRSGDQNSSGRYFGSIPVDIAEPGMLMPPRQHQRKDGLENEHSDYISLDVNEEVKDTVDQSFEQSTTFCDNDSLDLQLDTSDELIKPILLITKFTSQSSQSSSLEV. 2004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04271 2003 MobiDBLite consensus disorder prediction 1307 1394 - -
Seca3g04271 2003 FunFam zinc finger CCCH domain-containing protein 3 1788 1839 - -
Seca3g04271 2003 MobiDBLite consensus disorder prediction 1310 1347 - -
Seca3g04271 2003 MobiDBLite consensus disorder prediction 1883 1897 - -
Seca3g04271 2003 MobiDBLite consensus disorder prediction 838 855 - -
Seca3g04271 2003 ProSiteProfiles Zinc finger C3H1-type profile. 1758 1787 IPR000571 GO:0046872
Seca3g04271 2003 ProSiteProfiles Zinc finger C3H1-type profile. 1813 1839 IPR000571 GO:0046872
Seca3g04271 2003 PANTHER CCCH ZINGC FINGER 315 1989 - -
Seca3g04271 2003 ProSiteProfiles Zinc finger C3H1-type profile. 1840 1867 IPR000571 GO:0046872
Seca3g04271 2003 MobiDBLite consensus disorder prediction 1 34 - -
Seca3g04271 2003 MobiDBLite consensus disorder prediction 838 859 - -
Seca3g04271 2003 SMART c3hfinal6 1813 1838 IPR000571 GO:0046872
Seca3g04271 2003 SMART c3hfinal6 1840 1866 IPR000571 GO:0046872
Seca3g04271 2003 SMART c3hfinal6 1867 1889 IPR000571 GO:0046872
Seca3g04271 2003 SMART c3hfinal6 1787 1811 IPR000571 GO:0046872
Seca3g04271 2003 SMART c3hfinal6 1758 1786 IPR000571 GO:0046872
Seca3g04271 2003 MobiDBLite consensus disorder prediction 46 99 - -
Seca3g04271 2003 MobiDBLite consensus disorder prediction 63 85 - -
Seca3g04271 2003 MobiDBLite consensus disorder prediction 1196 1242 - -
Seca3g04271 2003 MobiDBLite consensus disorder prediction 501 533 - -
Seca3g04271 2003 Gene3D - 1841 1904 - -
Seca3g04271 2003 MobiDBLite consensus disorder prediction 501 544 - -
Seca3g04271 2003 MobiDBLite consensus disorder prediction 1879 1911 - -
Seca3g04271 2003 FunFam Zinc finger CCCH domain-containing protein 7 1841 1902 - -
Seca3g04271 2003 Coils Coil 1636 1656 - -
Seca3g04271 2003 MobiDBLite consensus disorder prediction 1196 1224 - -
Seca3g04271 2003 Gene3D - 1785 1840 - -
Seca3g04271 2003 MobiDBLite consensus disorder prediction 1373 1394 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04271 Seca-Chr3 82944799 82957385 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04271 1764 1893 C2H2 Transcription Factor Family AT2G32930 32.593 6.79e-06 48.9
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Seca3g04271 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04271 - - gmx:100802468 1846.25