Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04264 ATGGGTGTCTCAGGGAAGTGGATTAGGTCATTGGTTGGTCTAAAGAAATCAGAGAAGCCTGAGTCTTCTTCAGAGAAGGATGGAAATAAGGTTGGCAAGTTTCGGCATCGGAGAAAGCATTCCATTGAAATTAACAATAGCAAACTTCAAAATGAGTTTGATGATGATGGTACCCCGCCTAATAGAGATTCAGACAATGCAAATCCTCATTCAAACCTTGATATCCATTATTCACCTACTTCACAACAAGCACAGGATGCTGCATATAATCATCAAATCATGAGGGAAGAACGGGCTGCAACAGTCATTCAAACAGCATTTCGAGGATTCCTGTTACTTATTGCCAACAACTTTGACCAAACTGGAAGCTATTCTATGTTTCAGGCCAGAAGAGCACTACGAGCTTTGAAAGGATTGGTAAGGCTCCAGGCCCTTGTAAGGGGCCATGCCGTAAGAAAACAAGCTGCTATAACTCTCCGATGTATGCAAGCATTGGTGAGGGTTCAAGCTCGTGTTCGGGCAAGGCGTGTTCGCTTGGCATTGGAAAGTCAAACAGCACAACAGAAACTCCAGCAACAGCTTGCAAACGAAGCTCGTGTTCGAGAAATTGAAGAAGGTTGGTGTGACAGTGTGGGATCTGTTGAAGAAATTCAAGCCAAAATAATAAAGAGACAGGAGGCTGCAGCCAAACGTGAGAGAGCCATGGCATATGCTCTAGCTCATCAGTGGCAGGCAGGAACAAGGCAGCAGGCTGTGTCCTCCGGTTTTGAACCTGATAAAAGTAGTTGGGGTTGGAATTGGTTGGAAAGGTGGATGGCTGTACGTCCATGGGAGAATCGCTTTCTTGACATTAATATGAGGGATGGAGTAATGGCAGACGGAAATGGAGCTATTGATGGTAAAAAAGGAATCAGACCTCAGTTAAGATCTGCTAACACAAAATCAATTCCACCAAGTATTCATCCAAACCTTGACAGTCAGAAAACTGGTCCCTCTCTTTCTGATGGCTGTGATTCTTCTTCACCTAGCAAGTCAGCAGGTTTGCTAGAGACATCAAACATACAGTCTGTTAAACCAAAGTCTAATGCAAATGTTCAAGATCCCATTGAAGAAACCAACTCAAAATCTGAAACTCGAAGATCTCACAGTAATCCAAAGGAGAGAATCACACAGGTAGATAAACAGGCAAAAAAGCGACTATCTCTGCCTAACAGTGGGGGAGGTCCTGGGGTTCAAACAACCAGACATCCTACAAGAAGTTATGTGAAAGGGACACATGGCCCTCAAAAGCCTATAAGGGATAAACCTAAGCTCAATGGAGGAGGGGATGTGAATCTCACTAAATCTGTTGCACAGCGCACGGTCATGTAG 1371 0.4413 MGVSGKWIRSLVGLKKSEKPESSSEKDGNKVGKFRHRRKHSIEINNSKLQNEFDDDGTPPNRDSDNANPHSNLDIHYSPTSQQAQDAAYNHQIMREERAATVIQTAFRGFLLLIANNFDQTGSYSMFQARRALRALKGLVRLQALVRGHAVRKQAAITLRCMQALVRVQARVRARRVRLALESQTAQQKLQQQLANEARVREIEEGWCDSVGSVEEIQAKIIKRQEAAAKRERAMAYALAHQWQAGTRQQAVSSGFEPDKSSWGWNWLERWMAVRPWENRFLDINMRDGVMADGNGAIDGKKGIRPQLRSANTKSIPPSIHPNLDSQKTGPSLSDGCDSSSPSKSAGLLETSNIQSVKPKSNANVQDPIEETNSKSETRRSHSNPKERITQVDKQAKKRLSLPNSGGGPGVQTTRHPTRSYVKGTHGPQKPIRDKPKLNGGGDVNLTKSVAQRTVM. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04264 456 ProSiteProfiles IQ motif profile. 137 164 IPR000048 GO:0005515
Seca3g04264 456 MobiDBLite consensus disorder prediction 372 395 - -
Seca3g04264 456 MobiDBLite consensus disorder prediction 1 77 - -
Seca3g04264 456 MobiDBLite consensus disorder prediction 311 445 - -
Seca3g04264 456 MobiDBLite consensus disorder prediction 62 77 - -
Seca3g04264 456 MobiDBLite consensus disorder prediction 12 31 - -
Seca3g04264 456 MobiDBLite consensus disorder prediction 311 371 - -
Seca3g04264 456 MobiDBLite consensus disorder prediction 406 420 - -
Seca3g04264 456 Pfam IQ calmodulin-binding motif 97 111 IPR000048 GO:0005515
Seca3g04264 456 PANTHER IQ-DOMAIN 5-RELATED 1 407 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04264 Seca-Chr3 82867234 82873419 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04264 1 415 IQD Protein Family AT3G22190 54.654 9.75e-114 339
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04264 - - tpra:123923158 620.542