Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04260 ATGTTCTCGGCATCTATAGAGGTACCAAGGGGGTATAATGATGATTCATCTAACCCTAAAGAAAATGGTGAACAAAATAGTGATGATGACAGTGAACAAGACACAGAAAATGGCAACTCTAACCATAGTGGAGGTGATGGAAACACATGTGGTGATGGATATGCGGTGAACAGTATGGTTGACATTAAAAGGATCGACATTACTTCCTTGAGCAATGATGCAGTGATGAATTATCATTTCCCAAACATAGATGTGGCCTTTTCATTTTATGAATGGTTTGCAGAATTGAAAGGTTTTGCTCCACACAGAGACAAGTTTGTGAAAAACACTAAACGTGAAGTTGTGGAGAAGAACTTTGTGTGTTCTCGAGCGAGTTACCGTGATAAACGACACTTGAGAAGGAAGGATCATAAGCGTGAGCCAAGGTCTCAGACTAGGTGTGGTTGTACAACTATGTTTGTTGTCAGAGTTTCAGAAAGTGGTCGTTGGAAGATGAATGGGTTTGATATAGTGCAGATGAACCAGATGAGAAAAGTTGGAATTAGCACTAGACACATATATGGATCGTTTGCAAAGCAGGCTGGGGGATATGAGAGAATTGGCTTTAAAAAGCAGGATATGTATAATGAAATTGAAAGGCAACGACGTAAACAATTTTCTGATGCCAAAGCTGCATTGGCTTATCTTCGTGGTTTGAGATCTAAGGATGATGGGCTGTTTTGGAGTCACAGAGTGGATGATGATGGAAGGTTAGAACATTTATTTTGGTGTGATGGAAGAAGTCAACTTGACTATCTAACTTTTGGAGATGTCATTGCCTTTGATGCCACATATCGTCGAAATAAATACATGTTTCCATTGGTGGTTTTTTTCGGTGTCAACCATCACAACCAAATAATTATATTTGGTAGTGCGTTGGTAGCAAATGAGACTGAAGCAACATATGTGTGGCTCTTAGAACAATTTCTCTACGCTATGAAAGGTTTTAAGATAACATCTAGAGCTGAAGGATTGCATGCTTATCTTGGGAAGTATGTTAATTCACGCAATAACCTTGTCGAGTTCCTTGTTCAATTCAATATTTTTCTAGAGTACATGCAGTTCAAGGAAGTTGAAGCTGACTACAATTCATTGGTCGGTGAACCGATTTTGCAAACACCTTATGAGGAGTTGGAGAGGTCTGCATCCAAAGTATATACCAGAGAAGTATTCTACTTATTCAAAGATGTGCTATGTAGGGCATGCAAGATGAAGGTGGTTGAATGCAAAGAAATTCCATCGTGCTTGATTTATGTTGTTAGTAGGCGATTCAACTCACGGACTGAGTGGCATATTTGTTATAATAAAGAGACTGTTGAATTTAAATGTTCATGTCAACGAATGGAGTCTCTAGGTATTCCGTGTGAACACATACTTGCCTTGCTAATTTATCTTGATATTGATGAGTTGCCACAAAGTCTCTTGTTAGATAGGTAG 1476 0.3882 MFSASIEVPRGYNDDSSNPKENGEQNSDDDSEQDTENGNSNHSGGDGNTCGDGYAVNSMVDIKRIDITSLSNDAVMNYHFPNIDVAFSFYEWFAELKGFAPHRDKFVKNTKREVVEKNFVCSRASYRDKRHLRRKDHKREPRSQTRCGCTTMFVVRVSESGRWKMNGFDIVQMNQMRKVGISTRHIYGSFAKQAGGYERIGFKKQDMYNEIERQRRKQFSDAKAALAYLRGLRSKDDGLFWSHRVDDDGRLEHLFWCDGRSQLDYLTFGDVIAFDATYRRNKYMFPLVVFFGVNHHNQIIIFGSALVANETEATYVWLLEQFLYAMKGFKITSRAEGLHAYLGKYVNSRNNLVEFLVQFNIFLEYMQFKEVEADYNSLVGEPILQTPYEELERSASKVYTREVFYLFKDVLCRACKMKVVECKEIPSCLIYVVSRRFNSRTEWHICYNKETVEFKCSCQRMESLGIPCEHILALLIYLDIDELPQSLLLDR. 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04260 491 Pfam SWIM zinc finger 455 478 IPR007527 GO:0008270
Seca3g04260 491 PANTHER OS01G0519700 PROTEIN 179 328 - -
Seca3g04260 491 MobiDBLite consensus disorder prediction 1 50 - -
Seca3g04260 491 ProSiteProfiles Zinc finger SWIM-type profile. 441 479 IPR007527 GO:0008270
Seca3g04260 491 SMART 26again6 454 481 IPR006564 GO:0008270
Seca3g04260 491 Pfam FAR1 DNA-binding domain 88 168 IPR004330 -
Seca3g04260 491 Pfam MULE transposase domain 271 326 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04260 Seca-Chr3 82830987 82833925 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g04260 FAR1 1.6e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04260 - - tpra:123886262 287.73