Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04254 ATGGATGTTGATTCCTCGATGGTGCCGGAGTCCGATCACGATTCAGCGGTGCAGAACCATGCCGAGAGAGAGCAGCTAGCGGAGCTGCCATCATCGTCTTCGTCGGGCGGCGGATCTCCAGCGCAGCAGCAACAACCGCCACAGCAAGCGGCGGCTGCTACTCAGGTGCAGCACAGTCCGGTTGTTGGTCCCAGGCTTGCGCCGACTTACTCAGTGGTAAATGCGATTCTTGAGAAGAAGGAGGATGGGCCTGGGCCTCGGTGCGGCCACACGCTGACGGCGGTGGCGGCGGTGGGAGAGGAAGGCACGCCGGGGTACATTGGTCCGAGGCTTATTTTGTTCGGCGGTGCTACTGCGCTCGAAGGGAATTCCGCAGCTTCAGGGACTCCTTCATCTGCTGGAAATGCTGGCATACGTTTAGCTGGTGCCACAGCTGACGTCCATTGCTATGATGTCTTGACTAATAAATGGTCTAGGATAACTCCCTTTGGAGAGCCTCCAACCCCCAGGGCTGCACATGTTGCGACTGCTGTGGGAACAATGGTAGTTATTCAGGGTGGCATTGGTCCTGCTGGTTTGTCAGCAGAGGACCTTCACGTTCTTGATCTCACACAGCAACGGCCGCGGTGGCATAGAGTTGGTGTTCCAGGCCCTGGACCAGGGCCACGCTATGGACATGTTATGGCTTTGGTAGGGCAGAGGTATCTCATGGCAATTGGAGGCAATGATGGAAAGAGACCTTTGGCTGATGTATGGGCCTTGGACACAGCTGCCAAGCCTTATGAATGGCGCAAGTTGGAGCCAGAAGGAGAAGGTCCACCTCCATGCATGTATGCAACTGCGAGTGCACGCTCTGATGGGCTTCTTCTGCTTTGTGGAGGGAGGGATGCCAATAGTGTTCCATTAGCAAGTGCATATGGACTCGCAAAGCATAGAGATGGTCGTTGGGAATGGGCAATTGCCCCTGGTGTCTCACCATCTCCAAGATATCAGCACGCAGCGGTGTTTGTTAATGCAAGGCTCCATGTGTCTGGTGGGGCTCTTGGTGGAGGACGGATGGTAGAAGACTCGTCAAGTGTTGCAGTGTTGGACACTGCTGCTGGTGTTTGGTGTGACACAAAATCTGTTGTTACCAGTCCAAGAACAGGTAGATACAGTGCTGATGCAGCTGGTGGAGATGCCTCAGTTGAGTTGACACGGCGCTGTAGGCATGCAGCTGCTGCTGTTGGTGACCTAATTTTTATTTATGGTGGTTTACGTGGTGGAGTCTTGCTGGATGACCTGCTTGTTGCTGAAGATCTCGCTGCTGCTGAAACAACAACTGCTGCTTCACATGCTGCTGCTGCAGCAGCTGCATCTAATATACAAGTGGGGCGAGTACCTGGACGATATGGATTTGTTGATGATAGAACAAGGCAAACAATGCCTGAAGCGGCTGCTGATGGTGCAGTTGTTTTGGGAAATCCAGTTGCTCCCCCTGTAAATGGAGACATGTATACTGATATCAGCACTGAAAATGCCATGCTTCAGGGATCTAGAACTTTGAACAGGAGAACTAGCAAAGGAGTCGAGTATCTGGTTGAAGCATCTGCTGCAGAAGCTGAAGCTATCAGTGCCACACTGGCTGCTGCCAAGGCACGACAAGAGAATGGAGAAGTTGAATTGCCTGACCGAGACCGTGGGGCTGAGGCTACCCCTAGTGGGAAACAAATAACTTCATTGGTTAAGCCTGATTCTGCTGTGACAAATAGCATTGCTTCTGGTGGAGTTAGGCTGCATCACAGAGCTGTGGTTGTTGCTGCAGAGACTGGTGGTGCACTAGGTGGCATGGTTAGACAGCTTTCAATTGACCAGTTTGAAAATGAAGGCAGGAGGGTCAGTTATGGGACTCCAGAAAGTGCAACTGCTGCTAGAAAATTATTGGATCGACAAATGTCTATCAATAGTGTCCCAAAGAAGGTAATAGCACACCTCTTAAAGCCTCGTGGCTGGAAACCACCAGTTCGCCGGCAGTTTTTCTTGGATTGCAATGAAATTGCAGATCTTTGTGATAGTGCAGAGAGGATATTTTCAAGTGAACCAACCGTCATACAGCTTAGGGCACCGATTAAAATATTTGGTGATTTACATGGGCAGTTCGGGGATCTCATGCGCCTCTTTGATGAGTATGGTGCACCTTCAACTGCCGGTGACATAGCATACATCGACTATCTATTCCTAGGAGATTATGTTGATAGGGGTCAACACAGCCTGGAAACTATAAGCCTTCTGCTTGCTCTGAAGGTTGAGTATCCGAACAATGTACATTTAATACGTGGAAACCATGAAGCTGCAGATATCAATGCCCTTTTTGGTTTTCGAATTGAGTGCATCGAGAGGATGGGTGAGAGAGATGGGATTTGGGCATGGCACCGGATAAACCGTCTGTTTAATTGGCTTCCTCTGGCGGCTCTAATTGAGAAAAAGATTATTTGCATGCATGGGGGTATTGGTCGTTCAATAAATCATTTGGAACAAATTGAGAATATTCAGCGTCCAATTACGATGGAAGCAGGATCAATTGTGCTTATGGATCTATTGTGGTCTGATCCCACAGAGAATGACAGTGTGGAAGGGCTACGGCCCAATGCTAGAGGTCCTGGGTTAGTTACTTTTGGGCCTGATCGTGTCATGGAATTTTGCAACAACAATGATCTCCAGCTGATTGTTCGTGCGCATGAATGTGTGATGGATGGCTTTGAGCGTTTTGCCCAGGGACATTTGATCACCCTCTTCTCAGCTACAAATTACTGTGGTACTGCAAATAATGCTGGGGCAATATTAGTTTTGGGTAGAGATCTTGTTGTGGTTCCTAAACTGATTCACCCGTTACCACCTGCAATTTCTTCACCAGAAACGTCACCAGAACGTCATATTGAAGATACATGGATGCAGGAGTTGAATGCTAACAGACCACCAACACCAACAAGAGGCCGTCCTCAAGTAACAAATGACCGAGGTTCGCTTGCTTGGATATAG 3018 0.4947 MDVDSSMVPESDHDSAVQNHAEREQLAELPSSSSSGGGSPAQQQQPPQQAAAATQVQHSPVVGPRLAPTYSVVNAILEKKEDGPGPRCGHTLTAVAAVGEEGTPGYIGPRLILFGGATALEGNSAASGTPSSAGNAGIRLAGATADVHCYDVLTNKWSRITPFGEPPTPRAAHVATAVGTMVVIQGGIGPAGLSAEDLHVLDLTQQRPRWHRVGVPGPGPGPRYGHVMALVGQRYLMAIGGNDGKRPLADVWALDTAAKPYEWRKLEPEGEGPPPCMYATASARSDGLLLLCGGRDANSVPLASAYGLAKHRDGRWEWAIAPGVSPSPRYQHAAVFVNARLHVSGGALGGGRMVEDSSSVAVLDTAAGVWCDTKSVVTSPRTGRYSADAAGGDASVELTRRCRHAAAAVGDLIFIYGGLRGGVLLDDLLVAEDLAAAETTTAASHAAAAAAASNIQVGRVPGRYGFVDDRTRQTMPEAAADGAVVLGNPVAPPVNGDMYTDISTENAMLQGSRTLNRRTSKGVEYLVEASAAEAEAISATLAAAKARQENGEVELPDRDRGAEATPSGKQITSLVKPDSAVTNSIASGGVRLHHRAVVVAAETGGALGGMVRQLSIDQFENEGRRVSYGTPESATAARKLLDRQMSINSVPKKVIAHLLKPRGWKPPVRRQFFLDCNEIADLCDSAERIFSSEPTVIQLRAPIKIFGDLHGQFGDLMRLFDEYGAPSTAGDIAYIDYLFLGDYVDRGQHSLETISLLLALKVEYPNNVHLIRGNHEAADINALFGFRIECIERMGERDGIWAWHRINRLFNWLPLAALIEKKIICMHGGIGRSINHLEQIENIQRPITMEAGSIVLMDLLWSDPTENDSVEGLRPNARGPGLVTFGPDRVMEFCNNNDLQLIVRAHECVMDGFERFAQGHLITLFSATNYCGTANNAGAILVLGRDLVVVPKLIHPLPPAISSPETSPERHIEDTWMQELNANRPPTPTRGRPQVTNDRGSLAWI. 1006
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04254 1005 MobiDBLite consensus disorder prediction 25 56 - -
Seca3g04254 1005 Pfam Calcineurin-like phosphoesterase 702 909 IPR004843 GO:0016787
Seca3g04254 1005 FunFam Serine/threonine-protein phosphatase 66 263 - -
Seca3g04254 1005 PANTHER SERINE/THREONINE-PROTEIN PHOSPHATASE BSL3 1 1005 - -
Seca3g04254 1005 ProSitePatterns Serine/threonine specific protein phosphatases signature. 771 776 IPR006186 GO:0016787
Seca3g04254 1005 MobiDBLite consensus disorder prediction 1 59 - -
Seca3g04254 1005 SMART pp2a_7 674 958 IPR006186 GO:0016787
Seca3g04254 1005 FunFam Serine/threonine-protein phosphatase 267 467 - -
Seca3g04254 1005 SUPERFAMILY Metallo-dependent phosphatases 659 965 IPR029052 -
Seca3g04254 1005 Pfam Kelch motif 328 374 IPR011498 GO:0005515
Seca3g04254 1005 PRINTS Serine/threonine phosphatase family signature 898 918 IPR006186 GO:0016787
Seca3g04254 1005 PRINTS Serine/threonine phosphatase family signature 808 834 IPR006186 GO:0016787
Seca3g04254 1005 PRINTS Serine/threonine phosphatase family signature 702 729 IPR006186 GO:0016787
Seca3g04254 1005 PRINTS Serine/threonine phosphatase family signature 838 865 IPR006186 GO:0016787
Seca3g04254 1005 PRINTS Serine/threonine phosphatase family signature 920 936 IPR006186 GO:0016787
Seca3g04254 1005 PRINTS Serine/threonine phosphatase family signature 737 764 IPR006186 GO:0016787
Seca3g04254 1005 PRINTS Serine/threonine phosphatase family signature 770 794 IPR006186 GO:0016787
Seca3g04254 1005 Gene3D - 638 977 IPR029052 -
Seca3g04254 1005 MobiDBLite consensus disorder prediction 981 1005 - -
Seca3g04254 1005 MobiDBLite consensus disorder prediction 550 564 - -
Seca3g04254 1005 FunFam Serine/threonine-protein phosphatase 638 978 - -
Seca3g04254 1005 CDD MPP_Bsu1_C 654 956 IPR041758 -
Seca3g04254 1005 PIRSF STPPP_BSU1 38 1005 IPR012391 GO:0004721|GO:0009742
Seca3g04254 1005 Gene3D - 194 455 IPR015915 GO:0005515
Seca3g04254 1005 MobiDBLite consensus disorder prediction 548 576 - -
Seca3g04254 1005 MobiDBLite consensus disorder prediction 981 996 - -
Seca3g04254 1005 SUPERFAMILY Kelch motif 142 431 IPR015915 GO:0005515
Seca3g04254 1005 Pfam Galactose oxidase, central domain 222 275 - -
Seca3g04254 1005 Gene3D - 68 193 IPR015915 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04254 Seca-Chr3 82747206 82761792 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04254 666 901 Calmodulin-binding Proteins AT5G63870 29.412 1.26e-26 109
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04254 - - gmx:100816091 1779.99