Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04253 ATGAAAGTAATGAACAAAATAGAGTTGGCAAGTCGCAAGAAGCTTCTGAGGGCTCAGATAGAGATAGAGATATTGCAGTCTCTAGATCATCCATTTTTACCCACATTGTATACACACTTTGAGACAGAGAAATTCTCCTGCTTGGTGATGGAGTTTTGCCCTGATGGGGACCTACATGCACTCAGGCAAAGACAAGTAGACAACCTGGGAAGTATATTTCAGAGCATGTTGCCTGGTTAG 240 0.425 MKVMNKIELASRKKLLRAQIEIEILQSLDHPFLPTLYTHFETEKFSCLVMEFCPDGDLHALRQRQVDNLGSIFQSMLPG. 80
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04253 79 Pfam Protein kinase domain 1 65 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04253 79 SUPERFAMILY Protein kinase-like (PK-like) 1 65 IPR011009 -
Seca3g04253 79 Gene3D Phosphorylase Kinase; domain 1 1 76 - -
Seca3g04253 79 PANTHER FLIPPASE KINASE 1-RELATED 1 67 - -
Seca3g04253 79 ProSiteProfiles Protein kinase domain profile. 1 79 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04253 Seca-Chr3 82737377 82737616 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04253 1 65 AGC Kinase Gene Family AT5G47750 89.231 1.73e-35 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_RSK-2 Seca3g04253 Pkinase 1.2e-08 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04253 K08286 - cpap:110810193 122.094