Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04248 ATGGATGAAATTGAGGTCCCTGCCCTTTTCCTCTGCCCCATTTCCTTACAACTTATGAGAGACCCTGTCACAGTGTGCACAGGAATCACTTACGACAGAGAAAACATAGCAAGATGGTTATCTTCATACAGGAGCAATAGTTGCCCAGTTACTAAGCAACCACTCTTACACACAGATCTCACCCCAAACCACACTCTACACAGTTTGATCCAATCTTGGTGCACCCGTAATGGTTTGCAAGGAATTGAAAATGTTCCAATTCCAAAGCCAACCATTGACAAAACTCATGTTGTCAAACTCCTCTCTGAAGCAAAGAGGTTCCCAGATAAGCAACTCAAATGCATTAGGAGGCTTCAATCTATTGCTCTTGAAAGCGAAAGTAACAAAATCTGTTTGGTTTCCGCAGGGGTACCAGATTTCTTGGCTTCAACCATGATGAACATAAGCCAAAAAGATTCAACTTTTATGAGTGAAGTTGCTATTGAAGTCCTTTTTCACCTGAATCCTTCAGGGGGTGAGCTTAAAAATCTGATAAACAAAGAGGGCATTCAATTTATTGAGTCTTTGTTTCAGGTCTTGAAGTTTGGGAATCATCAGTCTAAAGGTTATGCAACTATGCTATTGAAGTCAACATTTGAGGTGGCTGATCCAATTCAATTAAACAGTGTCAGAACTGAACTGTTTGTGGAAATTACAAGAGTTTTAAGAAACCGAGTCAAAGCAGTTGAGGGTGGTGTGGTTTTTGTCCTTGTTGAGGTTCTTCTTGAAGCATCTGAAAGAAGATTATGTGAACTCATGTTGATGGTTTTGGATAAACTCTGTGGGTGTGCAGAAGGAAGGGCTGAATTGTTGAAGCATGGAGCTGGAGTGGCCATTGTAGCCAAGAAAATTCTAAGGATTTCTCATGGGGCAAGTGATAGAGGGGTTAGAATTTTGGCTTCCATTTGTAGGTATTCAGCCACCCCTAGAGTCCTTCAAGAAATGTTGATATTTGGAGCTGTGTCAAAGTTGTGTTTGGTGCTTGAAGTTGAAGGCAGTTTCAAGGCAAAGGACAGAGCCAGGGAGATACTCAAATTGCACTCTGCCGTTTGGAAGAATTCCCCTTGTATTCCTCAGCATTTGCTTTCATCCTATCCATGA 1140 0.4149 MDEIEVPALFLCPISLQLMRDPVTVCTGITYDRENIARWLSSYRSNSCPVTKQPLLHTDLTPNHTLHSLIQSWCTRNGLQGIENVPIPKPTIDKTHVVKLLSEAKRFPDKQLKCIRRLQSIALESESNKICLVSAGVPDFLASTMMNISQKDSTFMSEVAIEVLFHLNPSGGELKNLINKEGIQFIESLFQVLKFGNHQSKGYATMLLKSTFEVADPIQLNSVRTELFVEITRVLRNRVKAVEGGVVFVLVEVLLEASERRLCELMLMVLDKLCGCAEGRAELLKHGAGVAIVAKKILRISHGASDRGVRILASICRYSATPRVLQEMLIFGAVSKLCLVLEVEGSFKAKDRAREILKLHSAVWKNSPCIPQHLLSSYP. 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04248 379 SMART Ubox_2 9 73 IPR003613 GO:0004842|GO:0016567
Seca3g04248 379 SUPERFAMILY RING/U-box 3 82 - -
Seca3g04248 379 CDD RING-Ubox_PUB 7 60 IPR045210 -
Seca3g04248 379 PANTHER WDSAM1 PROTEIN 3 371 IPR045185 GO:0061630
Seca3g04248 379 Gene3D - 95 357 IPR011989 -
Seca3g04248 379 ProSiteProfiles U-box domain profile. 5 80 IPR003613 GO:0004842|GO:0016567
Seca3g04248 379 SUPERFAMILY ARM repeat 98 357 IPR016024 -
Seca3g04248 379 Pfam U-box domain 6 77 IPR003613 GO:0004842|GO:0016567
Seca3g04248 379 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 1 83 IPR013083 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04248 Seca-Chr3 82527310 82528517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04248 2 379 U-box Gene Family AT2G35930 47.160 8.06e-130 377
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04248 - - gmx:100778012 508.449