Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04247 ATGGCGACGTACTTTGATGGCAGCACTTCAGAAATCCAATCCTCTGCAGAAGGGTTACAGACACTTTACCTTATGAATCCAAACTACGTACCTTACTCTGATGCTGCAGCGCAACACCCAACGCCCAACATGCTTCTCGTCAATCCCAATACTTCTCCTACTTCATCTCCTCCCGCCAACGCGCTTAACCTCTCCAATTTCTCCCACGCGCCCCCACCTCCATCACCTAATAATAATCACCAACAACACTTACTCTCATCAAACATCCTCGGATCCACCACCACCGACACTCCAAACCAACGCTCCTTCCTCGGACAACATGAAATCTCCGCCTTCCACGGCTTTCCCGCCGCCGCAAATAATCCTCGTCTCCACTATAACCTATGGGGTTCGATATTTAATCAAAACCCATCATCATCAGTCACAGCGGCAACGATAGTCATCCCGAATAATAATTCAGGATGTACTGGTGTTGCTGCTGTGGCTGCGGCGGGAGATCTCTCGCCGCAGATTGGTTTCCAAAGACAGCAGAGCTTGTCACTGAGCCTTTCACCGCAACAAACAGCTTTCAGGTCTTTCTCCGGCGAGATGGATGCTCCAGGAAGCCGTGGCGGACATGATGTGCGGGTTGTGGGGAATAGAATTTCGAGCATGCAGAGTGTTGTGTTGGGGTCCAAGTATTTGAAAGCGGCGCAGGAGGTTCTGGATGAAGTTGTGAATGTGGGTAAAGGAATCTGCAAAGGGGAATCTATGGAAGGGGCTAATAATAATAATAATAATAAAAAAGAGAAGATGAAGGCGAATATTGAATCCACGTCTGGAGGAGAAAATAGTGGTGGAGGAAAGCAACAAGCTGGAGGAGTAGAATTAAGCACCGCACAGAGACAAGAGCTTCAGATGAAGAAGACCAAGCTTGTCACCATGCTCGATGAGGTAGAGTTAAGGTACCGACAGTATCACCAACAAATGCAAATGGTGATATCATCATTTGAGCAAGCAGCGGGATATGGGGCGGCAAAATCTTACACAGCTCTTGCCTTGAAGACAATCTCAAAGCAATTTCGATGTCTTAAAGATGCAATTGCTTCACAGATTAAGACAACTTGCAAGAGCTTAGGTGAAGATGATTGCTTAGGAGCTAAGGTAGAAGGTTCTAGACTGAGGTATGTTGATCACCATCTCCGACAACAACGAGCATTACAGCAACTTGGAATGATACAACACAATGCTTGGAGGCCCCAAAGAGGATTGCCTGAAAGAGCTGTTTCCGTTCTTCGTGCTTGGCTTTTTGAGCATTTCTTGCACCCCTATCCTAAGGACTCTGACAAGGTTATGCTTGCAAAACAAACTGGACTTACCCGGAGTCAGGTTTCTAACTGGTTTATAAATGCCCGAGTTCGGCTATGGAAACCAATGGTTGAAGAAATGTACATGGAGGAAATAAAGGATCAAGAGCAGAATAGTGGCTCACTGGATAACACAAACAAATCAAAAGATCAATCAAGCAAGGAGTTATGGTCAGGTGGTGCTAATACTACACATGAATCATCAGGTGCAATAAAACTTCATTCAAAAGCAGAAAGCTTCAACAACCAAAACACTTCTCCAACTGAGATCTCCAATTCCAATTCATTGTCAACATCTCCCATTGGAGGAGGAGGAGGATCCTTCCAATCCTTCCATCTTGCAGCAGGGTCATCTCCAAACAAGCCAAGAAGTAACTCTGAAATGCAAAACTCCCAAGGCAGCACACTTTCAGGAGAGACAGCCAATAGAGATGCACTCAACACAAAGTTTGACATTGAAAGGCACCCCAAAGATGGATACTCTTTAATGACAGCTGGCAATGAGAGTTATGGAGCATTCTCAATGGAAGATATTGGGAGGTTTAATGTCACTGATCAACAGCAGCAATTGGCTCCAAGGTTTCATGGAAATGGTGTTTCTCTAACTCTTGGACTTCCCCACAATGAGAATCTTTCTCTTTCAGCTGCAACACAGCATGGGTTTCTCTCACAGAACATGCATTTGGGAATGGGAAGCAATGAAAATGAGTTTTGTGCTATCAACAGTAATCAACCATCTTCTCATTCTGCCACCAGTTATGAAAGTATTGACATTCAAAACAGAAAAAGGTTTGCTGCTGCCCAGTTATTGAGAGATTTTGTGGCCTAA 2175 0.4492 MATYFDGSTSEIQSSAEGLQTLYLMNPNYVPYSDAAAQHPTPNMLLVNPNTSPTSSPPANALNLSNFSHAPPPPSPNNNHQQHLLSSNILGSTTTDTPNQRSFLGQHEISAFHGFPAAANNPRLHYNLWGSIFNQNPSSSVTAATIVIPNNNSGCTGVAAVAAAGDLSPQIGFQRQQSLSLSLSPQQTAFRSFSGEMDAPGSRGGHDVRVVGNRISSMQSVVLGSKYLKAAQEVLDEVVNVGKGICKGESMEGANNNNNNKKEKMKANIESTSGGENSGGGKQQAGGVELSTAQRQELQMKKTKLVTMLDEVELRYRQYHQQMQMVISSFEQAAGYGAAKSYTALALKTISKQFRCLKDAIASQIKTTCKSLGEDDCLGAKVEGSRLRYVDHHLRQQRALQQLGMIQHNAWRPQRGLPERAVSVLRAWLFEHFLHPYPKDSDKVMLAKQTGLTRSQVSNWFINARVRLWKPMVEEMYMEEIKDQEQNSGSLDNTNKSKDQSSKELWSGGANTTHESSGAIKLHSKAESFNNQNTSPTEISNSNSLSTSPIGGGGGSFQSFHLAAGSSPNKPRSNSEMQNSQGSTLSGETANRDALNTKFDIERHPKDGYSLMTAGNESYGAFSMEDIGRFNVTDQQQQLAPRFHGNGVSLTLGLPHNENLSLSAATQHGFLSQNMHLGMGSNENEFCAINSNQPSSHSATSYESIDIQNRKRFAAAQLLRDFVA. 725
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04247 724 MobiDBLite consensus disorder prediction 483 590 - -
Seca3g04247 724 Pfam Homeobox KN domain 428 467 IPR008422 GO:0003677|GO:0006355
Seca3g04247 724 SUPERFAMILY Homeodomain-like 412 478 IPR009057 -
Seca3g04247 724 CDD homeodomain 411 472 IPR001356 GO:0003677
Seca3g04247 724 ProSiteProfiles 'Homeobox' domain profile. 408 471 IPR001356 GO:0003677
Seca3g04247 724 FunFam BEL1-like homeodomain protein 9 414 476 - -
Seca3g04247 724 Pfam Associated with HOX 221 362 IPR006563 -
Seca3g04247 724 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 83 495 - -
Seca3g04247 724 Gene3D - 414 491 - -
Seca3g04247 724 MobiDBLite consensus disorder prediction 47 68 - -
Seca3g04247 724 MobiDBLite consensus disorder prediction 487 590 - -
Seca3g04247 724 MobiDBLite consensus disorder prediction 47 83 - -
Seca3g04247 724 SMART prehox3 216 363 IPR006563 -
Seca3g04247 724 SMART HOX_1 411 475 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04247 Seca-Chr3 82499778 82503662 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04247 1 724 Homeobox Transcription Factor Family AT2G35940 42.632 5.68e-137 417
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca3g04247 POX 9.5e-51 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04247 - - gmx:100786883 827.009