Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04243 ATGGGGTTTTTGCTGAAAGAAGCTTTGAAGACTCTATGTGCTCGGAATCAGTGGTCTTATGCTGTTTTCTGGAAGATCGGCTGCAACAATTCCAAGCTGTTAATCTGGGAAGATTGCTACTATGAACCCATGGCATCCTGGTTTCCTTCCCAGTCTCATCCAGGGATTCAGGAAGAGGACAGAGTCTGTTCATTGATTAACAAAATGATGGTGAATAATTCAGTCAATATCACTGGTGAAGGGATACTTGGACGGGCAGCATTTACAGGGAATCATCAGTGGATTCTCTTAAACAATTTTGCTAGAGATGCATATCCACCAGAGGTATGTACTGAGGTGATTAATCAATTTTCAGCTGGAATGCAGACAGTAGCTGTTATTCCTGTGCTTCCCCATGGTGTTGTTCAACTTGGTTCTTTCTTGCCAATAATGGAAAATATGGGATTTGTGAATGATGTCAAGAGCTTGATCTTGCAATTGGGATGCATTCCTGGTGCCCTTCTATCTGAAGACTATTCAACAAAACTTTCTAATGGAAGACTTGCTGGACCTGTGACTGATTGTGTGCCTGTGTATGTTGATCCACCAGTGATTACCTCAAACTGCACTCCAAATGTAGTTAATGGTTCCAACCAATTAAATAATTCATCTCATGCTCCAAGGCCCATTGCTCTACAGGGAGAAATAAATAATTACCAGGGTTCTGTATTGACACCTCAAAGCCATGCCCTAAACCAGATATTTGATAGCCTTTGCCAACCAAAGGCTCATTCAATGATTAAAACAAGTGTCAGTAGTGGCCAACAAGAGAATACATTTCTGAAGGCAGAAGCTCAAGTGATCCCTGCAAATCTTGATTCATGCCTGCAACAGCATCCTGTTTCATATAATGCTAGATCTGCATTCAATGAATTGGCTGGTTGTGGTCAATCAAGTTCAAATGACTGCAGCCTTAAATATATGGAACAGAAAATCCTATCAGGTGTTGGGAGACGAAGTAATGTTAATCCTAACATGAATACATCAAGTGCCTTAAATATGTCCCAACTGAAAACAGATGGAGGCCAAATTTTTTATCAAAGTCAGAGTTCTGGTAGTAGTTCACTACTTGGAGGAGTCCCAATACATAGTGGGATGAGTAATCTTTTAAGGGCAAACATGATTAACTGCCCAGTTTCAAACCCTCCAGAATTATCTACTGCTGATTTTTCTGGAACACAAAAAGTTGGGTTTGGAATTCAAAATGATAATTCAAATAAAGCTGGGATATATTCTGTGCCTAATTTGACTAGTCAATCAGCTACCAATCACATGCATCTGGAAGGCTCTAATCAGAAGAATCTTCCCCTTGATTTAAAGCATGCTCATGATGCTTTGGCTTCCACAGATCAAAGGATTGACGATGATTTGCTTCAGGCCCTTAAGATCCCATCTCTTCAGCTTGAGGATCATGTGCCTATGAGTGATCAGATCAATGGTTTTCTTCGTGATTGCCTCAATAAAGATGTTTCTAATCAACATATGATGCAAATGAATGTTAAACACGAAGAAGCTTGTGCTCAACTTCCATCAGGTGATGACCTCTTTGATGTTTTAGGTGTTGATTTCAAAAGGAAACTGCTGAATGGAAACTGGAATAAGTTGCTTGTCAATGAATTTGCCAATGCAGAAAATCAGGATAAAAAGGTAACATGTATGAATATGCCAGGTATAGGTCCTGATAATAGCTATTCAGTTAGTGAAGCAATATCAGACAGTGGCATCTTCTCTGGGACAGGCACTGACCACCTCTTAGATGCTGTGGTCTCAAGGGCTCAATCTACTGCAAAAATGAATTCTGATGAAATGTCTTGCAGGACAACATTGACAAGGAGTAGTACCACCTCTGTTCCCTCTCCTGCCTGCAAGCAGTTTATGTCTGATCATGTTGTCCCGGGGGCATTGTTTGATTTTCCTAAGACGGGGGTTAAAACAGGTGCAGAAACAAGTTCTCTTAGGTCTGGGTGTAGCAAGGGTGACACTGGAAACTGTTCTCAAACCACTTCCATATACGGGTCTCAACTTAGTTCATGGGTTGAGAATAGTAGTAATGTGAAGCGTGAAAATAGTGTTTCAACTGGATACTCTAAGCGGCCTGATGAAGTTTGCAAATCAAATCGTAAAAGGCTTAAACCTGGAGAGAACCCCAGGCCCCGACCTAAAGATCGCCAAATGATTCAAGATCGGGTGAAAGAGTTACGGGAAATTGTGCCAAATGGAGGCAAATGTAGCATAGATGCACTTCTGGAACGGACCATCAAGCATATGCTTTTCTTGCAAAGTGTAACAAAGCATGCTGACAAGCTGAAACAGACAGGAGAATCTAAGATTGTTAGTAAAGAAGGTGGATTGCTATTAAAAGATAACTTTGAGGGAGGGGCTACATGGGCATATGAAGTTGGCTCACAATCAATGGTTTGCCCTATCATAGTTGAGGATCTTAATCATCCTCGTCAGATGCTAGTGGAGATGCTTTGTGAGGAACGAGGTTTCTTTCTGGAAATAGCTGACCTAATCAGAGGATTAGGTTTAACCATCTTGAAGGGAGTCATGGAATCTCGCAATGACAAGATCTGGGCACGCTTCGCTGTTGAGGCCAACAGGGATGTAACAAGGATGGAAATATTCATGTCACTGGTTCGACTTTTGGAGCAAACAGTGAAGGGTGGTGCATCTTCATCCAATGCAATGGATAACAACATGATGGCTTATCATTCTTTCCCACAAGCTACCCAGATACCAGCAACTGGTAGGCCTAGTAGTTTGCAATGA 2811 0.4144 MGFLLKEALKTLCARNQWSYAVFWKIGCNNSKLLIWEDCYYEPMASWFPSQSHPGIQEEDRVCSLINKMMVNNSVNITGEGILGRAAFTGNHQWILLNNFARDAYPPEVCTEVINQFSAGMQTVAVIPVLPHGVVQLGSFLPIMENMGFVNDVKSLILQLGCIPGALLSEDYSTKLSNGRLAGPVTDCVPVYVDPPVITSNCTPNVVNGSNQLNNSSHAPRPIALQGEINNYQGSVLTPQSHALNQIFDSLCQPKAHSMIKTSVSSGQQENTFLKAEAQVIPANLDSCLQQHPVSYNARSAFNELAGCGQSSSNDCSLKYMEQKILSGVGRRSNVNPNMNTSSALNMSQLKTDGGQIFYQSQSSGSSSLLGGVPIHSGMSNLLRANMINCPVSNPPELSTADFSGTQKVGFGIQNDNSNKAGIYSVPNLTSQSATNHMHLEGSNQKNLPLDLKHAHDALASTDQRIDDDLLQALKIPSLQLEDHVPMSDQINGFLRDCLNKDVSNQHMMQMNVKHEEACAQLPSGDDLFDVLGVDFKRKLLNGNWNKLLVNEFANAENQDKKVTCMNMPGIGPDNSYSVSEAISDSGIFSGTGTDHLLDAVVSRAQSTAKMNSDEMSCRTTLTRSSTTSVPSPACKQFMSDHVVPGALFDFPKTGVKTGAETSSLRSGCSKGDTGNCSQTTSIYGSQLSSWVENSSNVKRENSVSTGYSKRPDEVCKSNRKRLKPGENPRPRPKDRQMIQDRVKELREIVPNGGKCSIDALLERTIKHMLFLQSVTKHADKLKQTGESKIVSKEGGLLLKDNFEGGATWAYEVGSQSMVCPIIVEDLNHPRQMLVEMLCEERGFFLEIADLIRGLGLTILKGVMESRNDKIWARFAVEANRDVTRMEIFMSLVRLLEQTVKGGASSSNAMDNNMMAYHSFPQATQIPATGRPSSLQ. 937
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04243 936 MobiDBLite consensus disorder prediction 713 738 - -
Seca3g04243 936 MobiDBLite consensus disorder prediction 694 738 - -
Seca3g04243 936 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 723 772 IPR011598 GO:0046983
Seca3g04243 936 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 156 IPR025610 -
Seca3g04243 936 CDD bHLH_AtLHW_like 727 796 - -
Seca3g04243 936 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 930 IPR043561 GO:0003700|GO:0006355
Seca3g04243 936 MobiDBLite consensus disorder prediction 694 709 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04243 Seca-Chr3 82147234 82153962 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04243 526 911 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G27230 54.592 2.22e-119 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04243 - - aprc:113857443 1449.11