Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04233 ATGGTAGGTATTCAGATCAAAGTTCGCATTTTTCTCTTCTCCTCCCTGATGGTTACAATGGGTTATGGTGATACAAACCCAAATGATCTCAAAATTCTGAGTGATTTCAGAAAAGGGTTGAAGAATCCAGAGCTTCTGAAATGGCCAGAAAATGGAGATGATCCCTGTGGCCCTCCTTCATGGCCTTATGTGTTCTGCTCTGGAGGTAGAGTCACTCAGATTCAGGCTAAGAATCTGGGTCTTCAAGGATCATTGCCTCCAAACTTTAACCAGCTCTCAGAACTCCAAAATTTGGGTCTTCAACGCAACAACCTCAGCGGGATGTTGCCCACTTTCAGTGGATTGTCCAAATTGCAATTCGCTTTCTTGGATTACAATGAGTTTGATGCAATCCCATCTGATTTCTTCAATGGACTCACCAGCATTAGGGTCTTGTCTTTGGAAGAAAACCCATTAAATGCTACTACAGGGTGGTCATTTCCTATGGACTTAGAAAATTCAGTGCAATTAACCAATCTCTCTCTGGTGCATTGTAATTTGGTCGGACCATTGCCTGATTTTCTAGGCACATTGCCTTCTCTCACAAATTTAAGGCTTTCAGACAACAGAATTTCTGGTGGAATTCCAGCTAGTTTTGGTCAATCTTCTTCAATCCAGGTTTTGTGGTTGAATGATCAAGATGGTGGTGGGATGGCAGGTCCTATTGATGTCATTGCTTCAATGACCTACCTGAGACAGGTTTGGCTACATGGAAACCACTTCACTGGGACAATTCCACAGAGCATTGGAAATCTAACTTCCTTGCAAGAGCTCAACCTTAACGGCAATCAACTTGTTGGCTTGATTCCAAATACCTTGGCAAATATGGACCTTGAGATACTGGTGTTAAATAATAACAGGTTCATGGGTCCAATTCCAAAGTTTAAGGCTGCCAATGTATCTTACGATTCCAATCTCTTTTGTCAGTCTAAGCCTGGACTTGAATGTGCCCCTGAAGTTACTGTTCTACTGGATTTTCTCCACAATCTGGATTATCCATCATTCCTCACTACTAAATGGTCCGGTAATGAACCATGTGGAGAGCCATGGTTTGGATTGAACTGCAATCACAACTCAGAGGTATCTATAGTCAATTTGCCTAGACAAAAGCTCAATGGTACACTGAGTCCCTCACTTGCTAAGTTAGATTCACTCCTTGAAATCAGGCTTGCAGGAAACAATATAACCGGGAATGTTCCTAGTAATTTTACTGAATTGAAATCTTTGAGATTGCTGGATATAGGTGATAATAATGTTGAGCCTCCATTGCCAAAGTTTCATGATGGTGTGAAGGTCATCATTGAGGGTAACCCTCTTCTTGCTAATCATACTGCAATGAACCCCCCCTTGCCTATTAGCAGCCCACCACCTTCAAGTGCACAGCCTTCACCGCACAACCCATCACCTTCACCACCATCCTCCCATATGCCACCTTCCTCTACGTCTATCCAATTTAAGCCTCAACCAAATAAATTCAAAAGATTCAAAACAGTAGTAATAATAGCTGGAGTTGCAATCTTTGCATTTTCTGCTCTTTTGGTTATTTCTCTCTTCATATATTGTTTGAAGAAGAAAAAAGCCTCCTTGGATGCTCCTAGCTCTGTTGTGGTTCACACTCAAGATCCATCTGATCCAGAAAAGATGGTTAAATTTGCAGTTACAAATAGCACCATTGGAAGCTTATCAACGAAGACAGGGATAAGTTCTCTGACTAACATTAGTAGTGAAACTGAAAGCTCTTATTTAATTGAGGATGGCAACCTTGTCATCTCTGTTCAAGTTCTACGCAATGTCACAGACAATTTTGCTTCAGAAAATGAGCTAGGCCATGGTGGGTTTGGAACTGTTTACAAGGGTGAACTAGAAGATGGGACAAAAATAGCAGTGAAGAGAATGGAGTATGGAGCTATTAGCAGTAAAGGATTGGATGAGTTTCAAGCTGAAATAGCTGTTCTTTCTAAGGTCCGACACCGACATTTGGTATCACTGCTAGGATATTCCATTGAAGGCAATGAAAGACTTTTGGTTTATGAATATATGCCTCTGGGTGCTCTAAGCAGACATCTTTTTCATTGGAAAAGCTTGAATTTGGAGCCTTTGTCTTGGTCACAGAGGCTTGTAATAGCTCTTGATGTTGCTAGAGGGATGGAATACCTTCATAATCTTGCCCGCCAGACCTTCATCCATCGAGACCTCAAGTCTTCTAATATTCTACTAGGGGATGATTTTCGAGCAAAAGTTTCTGATTTTGGTCTGGTGAAACTTGCCCCAGATGGTGAGAAATCTGTGGCAACAAAGCTTGCTGGAACATTTGGATACCTCGCCCCTGAATATGCAGTGATGGGGAAAATCACCACTAAAGTTGATGTGTTTAGCTATGGTGTGGTATTGATGGAACTTTTGACTGGATTAATGGCTCTTGATGAGAGCCGACCAGAGGAAAGCCGGTACTTGGCTGAATGGTTTTGGCAAATTAAATCAAGCAGAGAAAAACTAATGTCTGCCATTGATCCAGCTCTTGAAGCAAGTGAAGAGACTTTTGAGAGCATTTCCATTGTAGCTGAACTTGCTGGACATTGCACTGCAAGGGAAGCAAACCATAGGCCGGATATGGGTCATGCAGTCAATGTGCTGTCAGCATTAGTAGAGAAATGGCGACCAGTTGATGAAGAATTTGATTATGGCTGTGGCATTGACTACACTCAACCACTTCCCCAAATGTTGAAAATTTGGAAGGAAGCAGAAGGCAAAGATACCAGCTATACAAGTCTTGAAGACAGTAAAGGAAGTATACCAGCTAGGCCTGCTGGTTTTGCAGACTCCTTTACTTCTGCTGATGCTCGATGA 2886 0.42 MVGIQIKVRIFLFSSLMVTMGYGDTNPNDLKILSDFRKGLKNPELLKWPENGDDPCGPPSWPYVFCSGGRVTQIQAKNLGLQGSLPPNFNQLSELQNLGLQRNNLSGMLPTFSGLSKLQFAFLDYNEFDAIPSDFFNGLTSIRVLSLEENPLNATTGWSFPMDLENSVQLTNLSLVHCNLVGPLPDFLGTLPSLTNLRLSDNRISGGIPASFGQSSSIQVLWLNDQDGGGMAGPIDVIASMTYLRQVWLHGNHFTGTIPQSIGNLTSLQELNLNGNQLVGLIPNTLANMDLEILVLNNNRFMGPIPKFKAANVSYDSNLFCQSKPGLECAPEVTVLLDFLHNLDYPSFLTTKWSGNEPCGEPWFGLNCNHNSEVSIVNLPRQKLNGTLSPSLAKLDSLLEIRLAGNNITGNVPSNFTELKSLRLLDIGDNNVEPPLPKFHDGVKVIIEGNPLLANHTAMNPPLPISSPPPSSAQPSPHNPSPSPPSSHMPPSSTSIQFKPQPNKFKRFKTVVIIAGVAIFAFSALLVISLFIYCLKKKKASLDAPSSVVVHTQDPSDPEKMVKFAVTNSTIGSLSTKTGISSLTNISSETESSYLIEDGNLVISVQVLRNVTDNFASENELGHGGFGTVYKGELEDGTKIAVKRMEYGAISSKGLDEFQAEIAVLSKVRHRHLVSLLGYSIEGNERLLVYEYMPLGALSRHLFHWKSLNLEPLSWSQRLVIALDVARGMEYLHNLARQTFIHRDLKSSNILLGDDFRAKVSDFGLVKLAPDGEKSVATKLAGTFGYLAPEYAVMGKITTKVDVFSYGVVLMELLTGLMALDESRPEESRYLAEWFWQIKSSREKLMSAIDPALEASEETFESISIVAELAGHCTAREANHRPDMGHAVNVLSALVEKWRPVDEEFDYGCGIDYTQPLPQMLKIWKEAEGKDTSYTSLEDSKGSIPARPAGFADSFTSADAR. 962
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04233 961 Gene3D Ribonuclease Inhibitor 331 457 IPR032675 -
Seca3g04233 961 SUPERFAMILY Protein kinase-like (PK-like) 592 891 IPR011009 -
Seca3g04233 961 CDD STKc_IRAK 621 891 - -
Seca3g04233 961 Gene3D Transferase(Phosphotransferase) domain 1 693 906 - -
Seca3g04233 961 SMART serkin_6 615 894 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04233 961 FunFam receptor protein kinase TMK1 693 910 - -
Seca3g04233 961 MobiDBLite consensus disorder prediction 457 500 - -
Seca3g04233 961 PANTHER OSJNBA0070M12.3 PROTEIN 11 961 - -
Seca3g04233 961 MobiDBLite consensus disorder prediction 462 489 - -
Seca3g04233 961 FunFam receptor protein kinase TMK1 577 692 - -
Seca3g04233 961 ProSitePatterns Protein kinases ATP-binding region signature. 621 643 IPR017441 GO:0005524
Seca3g04233 961 Gene3D Ribonuclease Inhibitor 27 326 IPR032675 -
Seca3g04233 961 Pfam Protein tyrosine and serine/threonine kinase 618 889 IPR001245 GO:0004672|GO:0006468
Seca3g04233 961 SUPERFAMILY L domain-like 53 308 - -
Seca3g04233 961 MobiDBLite consensus disorder prediction 934 961 - -
Seca3g04233 961 Pfam Leucine rich repeat 244 301 IPR001611 GO:0005515
Seca3g04233 961 Gene3D Phosphorylase Kinase; domain 1 576 692 - -
Seca3g04233 961 SMART LRR_typ_2 92 114 IPR003591 -
Seca3g04233 961 SMART LRR_typ_2 139 162 IPR003591 -
Seca3g04233 961 SMART LRR_typ_2 115 138 IPR003591 -
Seca3g04233 961 SMART LRR_typ_2 191 215 IPR003591 -
Seca3g04233 961 SMART LRR_typ_2 265 288 IPR003591 -
Seca3g04233 961 SUPERFAMILY L domain-like 331 438 - -
Seca3g04233 961 FunFam Leucine-rich repeat receptor-like kinase 331 456 - -
Seca3g04233 961 ProSitePatterns Serine/Threonine protein kinases active-site signature. 740 752 IPR008271 GO:0004672|GO:0006468
Seca3g04233 961 Pfam Leucine rich repeat N-terminal domain 331 369 IPR013210 -
Seca3g04233 961 Pfam Leucine rich repeat N-terminal domain 27 67 IPR013210 -
Seca3g04233 961 ProSiteProfiles Protein kinase domain profile. 615 895 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04233 961 FunFam Receptor-like kinase TMK4 27 326 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04233 Seca-Chr3 82013667 82017944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04233 81 884 Receptor kinase-like Gene Family AT1G55610 29.907 6.05e-80 281
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-IX Seca3g04233 PK_Tyr_Ser-Thr 1.5e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04233 - - gmx:100815045 1524.61