Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04222 ATGGAGTCTCGGATGGATCAGTATGAGATCATGGAGCAGATCGGTCGCGGAGCTTTTGGGGCTGCTATTCTTGTTAATCACAAGGCCGAGAAAAAGAAATATGTGTTGAAAAAAATCAGGCTTGCGAGGCAGACTGAACGATGCAGAAGATCTGCTCATCAAGAGATGGCTCTTATTGCTCGAATCCAGCACCCTTACATTGTGGAATTCAAGGAGGCATGGGTTGAGAAGGGTTGCTATGTCTGCATTGTCACCGGATACTGTGAAGGTGGAGACATGGCTGAATTGATGAAAAAATCAAATGGTGCTTACTTTCCTGAGGAGAAACTCTGCAAATGGTTCACTCAATTATTGTTGGCAGTAGAATACCTGCATGGAAATTTTGTTTTACATCGAGACCTAAAGTGTTCCAACATCTTTCTTACCAAGGATCAGGATGTTCGCCTGGGTGATTTTGGGCTTGCTAAGACACTAAAAGCAGATGATTTGGCTTCTTCGGTGGTAGGAACTCCCAATTACATGTGTCCTGAACTGCTTGCAGATATTCCATATGGGTTCAAATCTGATATTTGGTCACTAGGTATATATTTTATAAGAATGTATCTGATACTTGCAGATTTGGTTTTGCTGCAGCTGAAATGCAATTTTGTTTTTGTTCAGGATGCTGTATATACGAGATGGCTGCTCATCACCCTGCTTTTAAAGCTTTTTAAAGTAAGCAAGGTTACATTTTTGCTCTACATGAAAGATAAGGATATGGCAGGATTGATAAGCAAGATAAATCGCTCCTCTATTGGCCCTTTGCCTCCATGTTATTCCCCTTCCTTGAAAACACTGATAAAGAGCATGCTGAGAAAAAATCCTGAGCATCGGCCTACAGCATCTGAGGTGTTAAAGCACCCTTATTTGCAACCTTATGTTGATCAATATCGTCCATCTTTCAATCCTCCAACAGCCTGTTCTCCTCAAAAACCAATTTCTTCTGTCAACGATCCTCGAAAAAATATGGCTGAAAGCCAAAACAGTAATAGTTCAAGTAGTGACAAAGATAGTTTGATGTCAAATGAGAGAAATATTGCAACATCAGTGCCAAGGTGTGATAACAAAGCCACTGAGACGGATCTTGCATCATATGATGATGATGGCTTGGAGCATCCCTTGCCTAGTGAGGAAGAAAATGGCTCTAGTAATGCCCATGCCAAAACAGCTGAGCATGAGGTGATGAAACCATTTCATAATGAACAGTGTTCTAATATTGAATCTAAGCAGCCAAAAACAATCAGAAATATAATGATGGCATTGAAAGAGGGAAAAGTTAGAGAAGCAACTTCTCCAATGAGGGGAAATCGGATAAAGGCTGGTGGTGTATCAACACAGAAAATAAATACAGAGACATTGTCTAAATTGCCTAAACCCACTATTATTGCTCCTGGTTTGAAGCCTAATTTAGAGTCACCAACTGTTTCACATGCAAAGGCAACCCCTGATTCTGCAAAACGAATACAGGGATCACATCATTCAAAGCATCAGTTACTTATGACAGAACCCTCACCAAAAGTTAAACCCAGACATGATTTGACTCCACCATCTGGCCTTATCAAACAAGTAGAAGGAGATGGAGTTCCTCCCAAGCCAAGGCAAAGGACTCCCCCAAGCTTACTTAGACGGCCTTCATTTTCAGGACGAATGAGGCTGGCTGGATTTGATGTCCCAAATGCAGCAAATGATACTGGGAAGCTAGGTCCGTCCAAAATAGTCCAGGAGTCTGAGATGAGCCATTATCAATTGACAAATGGCAATGTACCACATATTTCTAGACAGATTACTAGAGAACCTCAGAAGGCTTTTGAAAGAAGTTCCAAAGGAATGCAAACGGACAGCAGTAATTCTGCTTCATCTTCAGTTTCTATTCAAGGATGTGAACTTGCTGATGATGCAACAACTTTTATTGACATGAGAGAGCATATGCTTCCTGATCATGAGAGTGTGACCCACATTGTAGGTGTGGAATCATGTCCAAACAGCAGCCCATCTACAACCTGTTCACGGTGTAATATGGTTGAAGAAGTGTCTGAGGAAACCTGTGAAGTCAACCTGAATTTTCAGGATACTATTAGTAGTAATGAAAAAGTGAGTTCCAGTTTAACTTTGGATCACCCTATTGAAGATTCTAAGGTAATGCTTGCTTCAGAAGATAGTCTTCCCATAAATCAGATAACAATATCTGCTGTCTCTGGGTGTGATAATAGACCTGTGGACCCCCCTGCTGAAGCCACAAAAGAAATCAAAGATCTTCAAGATATTTCTAAGGAAATGGCTTTAACCAAGTCTCTCAAACATTCATTCCCAATTTCTGGAGAAAAGTCTGTTTGTGAAGAGGTTGGTCCAGTTAACAAACTCAATAATAGCCCTGATATAGTTAGCCAGCCACAACGTGCGTGTAAGTCCACTGGTGATGACAAGTTCACCGTAAGGGAAAGACTGTCATCTGTGACTGAAACTGCTCCTCTGATTACCACTACTAAATTAACAAGCCAGAAAGTTTTGCAAGAGAAAGGAACTGTCTTGCAGAATCCCACACCAGAAAGGCCGGATACTGGCCATCTTCCTCCAGCCTTTGATGATGTCATCCATGTTATACGCCATAGTAGTTACCGTGTTGGAAGTGAGCAGCCAGTGAAGGAATCTGTGGAGATGGGAGTTCAAAATGTAGATGTTGGTAAGTTTATCAATGTTGTGAGGGATGATTTAGAAATGAGAAACATAAGCTCTCCTTTGGCCCATAAATCTTCAAGTTGCTCCGAAGCTACAAGCTTAAAATCAAATGTTTCTGATCAGTTAGAAATGAGAAACAGTAGCACCCCTCCTACACTTAAATCTTCGAGCTTCTCTGATGCTTTGAGCTCAAAATCAAGCATTTCTGATCACCCTGGTATTAAGGAACAAGATGTAAGTAACCCTGTTTCTTTAGTTTCAGAATCTGATTCCACCGAGCCCAGTAAATGTAACACTCCAACAACTGAAGACAAACCACCGGCAAAGGAAGCACTGGATGTGAAATCTTTCAGGCAGAGAGCAGAAGCACTGGAAGAGCTCTTAGAATTGTCAGCTGAGTTGCTGCAGCAAAACAGATTGGAGGAACTTCAAGTTGTTCTAAAGCCTTTTGGGAAAGATAAGGTCTCCCCAAGGGAGACAGCAATTTGGTTAGCCAAGAGTCTTAAAGGAATGATGTCTGAGGAAAGTGGGGGACGCAGTTCATGA 3261 0.4152 MESRMDQYEIMEQIGRGAFGAAILVNHKAEKKKYVLKKIRLARQTERCRRSAHQEMALIARIQHPYIVEFKEAWVEKGCYVCIVTGYCEGGDMAELMKKSNGAYFPEEKLCKWFTQLLLAVEYLHGNFVLHRDLKCSNIFLTKDQDVRLGDFGLAKTLKADDLASSVVGTPNYMCPELLADIPYGFKSDIWSLGIYFIRMYLILADLVLLQLKCNFVFVQDAVYTRWLLITLLLKLFKVSKVTFLLYMKDKDMAGLISKINRSSIGPLPPCYSPSLKTLIKSMLRKNPEHRPTASEVLKHPYLQPYVDQYRPSFNPPTACSPQKPISSVNDPRKNMAESQNSNSSSSDKDSLMSNERNIATSVPRCDNKATETDLASYDDDGLEHPLPSEEENGSSNAHAKTAEHEVMKPFHNEQCSNIESKQPKTIRNIMMALKEGKVREATSPMRGNRIKAGGVSTQKINTETLSKLPKPTIIAPGLKPNLESPTVSHAKATPDSAKRIQGSHHSKHQLLMTEPSPKVKPRHDLTPPSGLIKQVEGDGVPPKPRQRTPPSLLRRPSFSGRMRLAGFDVPNAANDTGKLGPSKIVQESEMSHYQLTNGNVPHISRQITREPQKAFERSSKGMQTDSSNSASSSVSIQGCELADDATTFIDMREHMLPDHESVTHIVGVESCPNSSPSTTCSRCNMVEEVSEETCEVNLNFQDTISSNEKVSSSLTLDHPIEDSKVMLASEDSLPINQITISAVSGCDNRPVDPPAEATKEIKDLQDISKEMALTKSLKHSFPISGEKSVCEEVGPVNKLNNSPDIVSQPQRACKSTGDDKFTVRERLSSVTETAPLITTTKLTSQKVLQEKGTVLQNPTPERPDTGHLPPAFDDVIHVIRHSSYRVGSEQPVKESVEMGVQNVDVGKFINVVRDDLEMRNISSPLAHKSSSCSEATSLKSNVSDQLEMRNSSTPPTLKSSSFSDALSSKSSISDHPGIKEQDVSNPVSLVSESDSTEPSKCNTPTTEDKPPAKEALDVKSFRQRAEALEELLELSAELLQQNRLEELQVVLKPFGKDKVSPRETAIWLAKSLKGMMSEESGGRSS. 1087
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04222 1086 SMART serkin_6 8 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04222 1086 ProSiteProfiles Protein kinase domain profile. 8 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04222 1086 ProSitePatterns Serine/Threonine protein kinases active-site signature. 129 141 IPR008271 GO:0004672|GO:0006468
Seca3g04222 1086 SUPERFAMILY Protein kinase-like (PK-like) 4 327 IPR011009 -
Seca3g04222 1086 Pfam Protein kinase domain 8 303 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca3g04222 1086 MobiDBLite consensus disorder prediction 611 637 - -
Seca3g04222 1086 CDD STKc_Nek 7 303 - -
Seca3g04222 1086 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 5 1034 - -
Seca3g04222 1086 FunFam Serine/threonine-protein kinase Nek2 5 87 - -
Seca3g04222 1086 MobiDBLite consensus disorder prediction 926 1007 - -
Seca3g04222 1086 MobiDBLite consensus disorder prediction 372 388 - -
Seca3g04222 1086 MobiDBLite consensus disorder prediction 313 400 - -
Seca3g04222 1086 MobiDBLite consensus disorder prediction 472 558 - -
Seca3g04222 1086 MobiDBLite consensus disorder prediction 926 1014 - -
Seca3g04222 1086 Gene3D Phosphorylase Kinase; domain 1 1 87 - -
Seca3g04222 1086 MobiDBLite consensus disorder prediction 314 368 - -
Seca3g04222 1086 MobiDBLite consensus disorder prediction 618 637 - -
Seca3g04222 1086 Gene3D Transferase(Phosphotransferase) domain 1 90 375 - -
Seca3g04222 1086 Coils Coil 1023 1049 - -
Seca3g04222 1086 ProSitePatterns Protein kinases ATP-binding region signature. 14 37 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04222 Seca-Chr3 81848883 81856162 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04222 9 308 MAP Kinase Kinase Gene Family AT4G26070 28.990 2.02e-28 115
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Seca3g04222 Pkinase 3.9e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04222 K08857 - gmx:100784761 1563.9