Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04219 ATGGGTGTGCCAGCTTTCTATAGATGGTTGGTTAACAAATACCCGAAGGTGGTTGAAGACGTGAACGCCACCACCATGTCAAACCCAAATGATGGAGTGGGTTATGATAACTGTTATCTTGACATGAATTCCATTATCCACCCCTGTTTTCACCCCGAGGAGGATCCCAACAGTCCACCACCACCAACAACGTTCGAAGAAGTGTTTACGAATATCTTCAACTACATTGATAGACTTGTGAGCATTGTTAGGCCTCGGAAGCTATTGTACATGGCTATCGATGGAGTAGCCCCACGCGCCAAAATGAACCAACAAAGATCGAGGCGTTTCAGAAATGCCAAGGACGAAGAAATGCGTGAAGCTGAGGAAGAGAGGCTTAGGAAGCAATTTGAATTGGAAGGAAAACAAGTTCTTCCTAAACAAGAATCTCAAGTGTCAGATTCTAACACCATAACACCTGGAACAGAGTTCATGTACCAACTCTCAAAGGCCCTTAAAACCTATATCTCTTCAAAGATAGACTCTGATTCGTTATGGAGGGATATTATGGTGATTCTCTCTGATGCTAATGTTCCTGGAGAAGGGGAACATAAGATTATGTCATACATTCGCAAACAGCGTAGCCTTCCTGGATATGATCCAAACACTAGCCACTGCTTATATGGCTCGGATGCTGATCTAATAATGCTTGGAATGGCAACTCATGAGCCACATTTTTCAATCTTAAGAGAGGTACAGGACGTTCTTATTCAAGAGCAGAAGCAACAGATTGCTGCTAGGCCTTTCAAGTTTTTGCATATTTGGCTATTGAGGGAATATCTTGAGATAGACATGAAGATTCAAGATCCTCCCAAAAATTGCAGGATTGATTTTGAGCGCATAATTGATGATTTCGTCTTCATGTGTTTCTTTTCTGGAAATGATTTTCTACCCCACATGCCATCTTTGGATATTCGCGAGGGTGCTATTGATTTACTGATGACAGTTTACAAGAAACAATTCAATAAACTTGGAGGATATCTTGTGGACATCACAAAGGTTGGGGAGAAACATGCTGCATTTGTCAAGTTATCTAGAATTGAAAAATTTATACTTATGGTTGGTACATATGAAGAGAAAATCTTCAATAAAAGATCCGAAATTAGAGACCGGAAATTGAGAAAGATTATAAGTGATTTTGAGCACTCAAAACAGGAAGAACAGGATGCAGTTAATTGCTCAGATTTTGACAATGAAAGTAGTTCGGATTGTGCTCTTCTCATTAAGAAAGCCCCGGCTTCCCAAGGTTCGCCTGCTGAAAACACAAAGGAGTTAAAAGAGGAATTAAAAAAATGCATTAGACAAAAAGGTGACTTGTTTAAGAGTGGCGAATTTCTAATTGACAAGATAAAATTGGGAACTGCTGGTTATAAAGAAAGATATTATAAAGAGAAGTTTTCAGTGGAGGGCTCCACTGACATTGAGTGCACAAGAAAAGATATAGTCCAGAAGTACACTGAGGGATTGTTGTGGGTTCTTCAGTACTATTTTTCAGGAGTTCCTTCATGGACATGGTTTTATCCTTACCACTATGGTCCATTTGCTTCAGAATTAAGGGGAATGAGTCAGGTCAGAGTTAATTTTGAGAAAGGCACCCCGTTCTTACCTTTTGATCAACTTTTAAGTGTTCTGCCCCCAAGGAGTGCTAATGCACTTCCAGAAGCCTATGCTAAGTTAATGCTGGATGAGCAGTCCAGAATATACGAGTGGTATCCTCAGGATTTTGAAGTTGACATAGAAGGAAAGCGCTTCATGTGGCAGGGTGTCTGCAAACTGCCATGGATAGAGGAAAAACGGCTTTTGACTGAAACCAGAGAACTCAAAAATGGATTATCTGAAAATGAAAAGATAAGAAATTCAATTAAAGTCGATAGCTTGTTTGTTAGAAGCACTAACAAGTTGGGAGAGAAAATTTGTTCCCTTTCTCTGGAGTCAAACGTTAACCCATCTTTCAAGTTACATACGAGTATAAGTGACGGGATTGGAGGTACCATAAGTCTTTGCCATGAATGTCTTGAGAAGCCTTGCTTAGGGATAGAGACATGTGACAACAAACAAGAAGATCGTGTCATATGTGTCTATTACGAGCTGCCTGCTGGGGGTAGTAGTCTTATTCATTTGCTATCAGGTGTAGAATTTCCAGATAAGACAATATTTGACAATGACATAATGGAAACAGTTCTCTGGCATGAAAGTCAGAGACACGGTCGTTTTGATAGGGTGCCGATTCAAGATAAGTGGAGGAGTACAAATAGTGGAAACAGTGGTATAAAGTTTTCCCCAAATGCAAATACTCAACGTAGAAGTTTTTCATTAAATACACCTACTGTGACTGTTCCTGAAGTGACATACAAAGGTGCTGGTGTTGGATGGGGTTCTTCAGGTAGAGGGAAGCCAGGCAACAGTCCTAATATGAAAAGAAATGATACCATGATAAATGATAAAATGACATCCTTGTCTCTTTCTCATAAACAATTTAAGGATGCAGGATCTTATTCTTATCATCAAGTTTCACAATCTGATACTACTATGCCTTTTGGAAGGGGACGTGGTAGGCTTCAACCGAATTTCAATAATGTAAATTCATGGAGGGGCGTTTCTTCTTCTAACAGCTCACTGCGGCCTCAATGGAATGGTGCAAAAGAATACAAAGTGAAAGATCAAAATCGTTGGAGTGAAAGGCCCGGTGCTGGTGCTGGTGCTGGTGCTGCAACTTCTTTTCTTATAGTTACTAAATACCTGTTGTCATTAGATCATTATAGCTATTTGTTTTTAACGCTGCTACATGACACGAGAATTAATTGTCAAGAAAGAATCTCACCTCTTTCCCTCACATTTCATCTTCCGATTCCCCCAATTTCCATCTCCGATCAGTTTCAATTTGATCCCGCTCGGAACTCGATCGACGGCAGGTGGATGTCGGGCACGCGAGCTCCCCCCGCCGCCGCGCCTTCTAACCCGCCGGAGCAGATCATGCAGTCAATGAAACGCCAACTGCCGTTCTCCTCCATGAAACCGCCTTTCGTAGCTGCCGGAGATTATCATCGTTTCGCCCCCGACCAACGCCGAAATCCTGAGCAAGACGCCGAAGCCATCGTCGTTAAGACTCCCGTCAATTTCTTGAGCAATGAGGAACCTGAGAGGATGCGCTTGTTGATCACCCAGGAGTTGAGACTACTGAAGCGGAAGAATGAAGCAGCCGATTTTGAAGCTGATTCAGGTGATAGGATGACTCATGGATCCACTGATGCAGCTAATAGTCCTTTTCAGACGCCTGTATCAGGAAAGACGGGGAAGGGGGGCAAATCCTCTAGGTTGACAAAATGCAACAGATCTGGAACTCAAACTCCAGGCTCAAATATTGGTTCTCCTTCTGGCAATAATCTCACTCCTGCTGGTCCATGTCGTTATGACAGCTCTTTAGGTTTGTTGACAAAGAAGTTCATCAATTTGATCAAACAAGCAGAGGATGGTATTCTCGATCTGAATAAAGCTGCTGACACATTAGAGGTGCAAAAGAGGAGGATATACGATATAACAAATGTTCTTGAAGGGATTGGCCTCATAGAAAAGAAGCTCAAGAACCGGATTCAATGGAAGGGACTGGATGTTTCAAGACCAGGGGAGGCTGATGATAGTTTTGCTAGTTTACAGTCAGAAGTTGAAAATTTAACAATGGAGGAGCGCCGGTTAGATGAACAAATAAGGGAGATGCAAGAAAGACTACGGGATCTTAGTGAAGATGAAACCAATGAGAAGTTGCTTTTTGTCACTGAGGAAGATATAAAGAACTTGTCCTGCTTCCAAAATGAAACGTTGATAGCAATTAAAGCTCCACACGGCACCACTTTGGAGGTCCCTGATCCTGATGAGGCTGTTGATTATCCACAGAGGAGATACAGGATAGTTCTGAGAAGCACAATGGGCCCAATAGATGTTTACCTTGTTAGTCAATTTGAAGAGAAGTTTGAGGAGATTAATGGTGTTGATGTTGCACCCAAATTTCCATCCAGTCCAGAATTTCACAAGCATCAATCAACTGTGGTCCCAGAGGATAGAGGGAAGGACACAGAGGTGCAGGGACAAGATGTTCATGGACCTAGTTCGGATTTCACTTCCTCTCAGGATTTTGTGAGTGGAATCATGAAGATTGTTCCTTCAGATGTTGCTAGTGATGCTGATTACTGGCTTTTATCAGATGCCGATGTTAGCATAACTGACATGTGGAGAACAGAACCTGGAGTTGAATGGAATGAACTGGACACACTCCAAGAAGATTATTGTATGACTCGTGAGCAAACTACAACTCCAAGTCATCCTTCGAATGTAGGTGAAGTGCCTTCTGCATCTAACCCTACTGGAGGTTGA 4407 0.42 MGVPAFYRWLVNKYPKVVEDVNATTMSNPNDGVGYDNCYLDMNSIIHPCFHPEEDPNSPPPPTTFEEVFTNIFNYIDRLVSIVRPRKLLYMAIDGVAPRAKMNQQRSRRFRNAKDEEMREAEEERLRKQFELEGKQVLPKQESQVSDSNTITPGTEFMYQLSKALKTYISSKIDSDSLWRDIMVILSDANVPGEGEHKIMSYIRKQRSLPGYDPNTSHCLYGSDADLIMLGMATHEPHFSILREVQDVLIQEQKQQIAARPFKFLHIWLLREYLEIDMKIQDPPKNCRIDFERIIDDFVFMCFFSGNDFLPHMPSLDIREGAIDLLMTVYKKQFNKLGGYLVDITKVGEKHAAFVKLSRIEKFILMVGTYEEKIFNKRSEIRDRKLRKIISDFEHSKQEEQDAVNCSDFDNESSSDCALLIKKAPASQGSPAENTKELKEELKKCIRQKGDLFKSGEFLIDKIKLGTAGYKERYYKEKFSVEGSTDIECTRKDIVQKYTEGLLWVLQYYFSGVPSWTWFYPYHYGPFASELRGMSQVRVNFEKGTPFLPFDQLLSVLPPRSANALPEAYAKLMLDEQSRIYEWYPQDFEVDIEGKRFMWQGVCKLPWIEEKRLLTETRELKNGLSENEKIRNSIKVDSLFVRSTNKLGEKICSLSLESNVNPSFKLHTSISDGIGGTISLCHECLEKPCLGIETCDNKQEDRVICVYYELPAGGSSLIHLLSGVEFPDKTIFDNDIMETVLWHESQRHGRFDRVPIQDKWRSTNSGNSGIKFSPNANTQRRSFSLNTPTVTVPEVTYKGAGVGWGSSGRGKPGNSPNMKRNDTMINDKMTSLSLSHKQFKDAGSYSYHQVSQSDTTMPFGRGRGRLQPNFNNVNSWRGVSSSNSSLRPQWNGAKEYKVKDQNRWSERPGAGAGAGAATSFLIVTKYLLSLDHYSYLFLTLLHDTRINCQERISPLSLTFHLPIPPISISDQFQFDPARNSIDGRWMSGTRAPPAAAPSNPPEQIMQSMKRQLPFSSMKPPFVAAGDYHRFAPDQRRNPEQDAEAIVVKTPVNFLSNEEPERMRLLITQELRLLKRKNEAADFEADSGDRMTHGSTDAANSPFQTPVSGKTGKGGKSSRLTKCNRSGTQTPGSNIGSPSGNNLTPAGPCRYDSSLGLLTKKFINLIKQAEDGILDLNKAADTLEVQKRRIYDITNVLEGIGLIEKKLKNRIQWKGLDVSRPGEADDSFASLQSEVENLTMEERRLDEQIREMQERLRDLSEDETNEKLLFVTEEDIKNLSCFQNETLIAIKAPHGTTLEVPDPDEAVDYPQRRYRIVLRSTMGPIDVYLVSQFEEKFEEINGVDVAPKFPSSPEFHKHQSTVVPEDRGKDTEVQGQDVHGPSSDFTSSQDFVSGIMKIVPSDVASDADYWLLSDADVSITDMWRTEPGVEWNELDTLQEDYCMTREQTTTPSHPSNVGEVPSASNPTGG. 1469
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04219 1468 Gene3D - 1222 1331 - -
Seca3g04219 1468 MobiDBLite consensus disorder prediction 1358 1373 - -
Seca3g04219 1468 MobiDBLite consensus disorder prediction 1092 1146 - -
Seca3g04219 1468 Pfam E2F/DP family winged-helix DNA-binding domain 1151 1214 IPR003316 GO:0005667|GO:0006355
Seca3g04219 1468 Gene3D - 138 353 - -
Seca3g04219 1468 Gene3D - 1 137 - -
Seca3g04219 1468 Pfam E2F transcription factor CC-MB domain 1230 1330 IPR032198 GO:0046983
Seca3g04219 1468 MobiDBLite consensus disorder prediction 1082 1146 - -
Seca3g04219 1468 Gene3D - 534 634 - -
Seca3g04219 1468 FunFam E2F transcription factor 1 1143 1216 - -
Seca3g04219 1468 SUPERFAMILY E2F-DP heterodimerization region 1228 1331 IPR037241 -
Seca3g04219 1468 MobiDBLite consensus disorder prediction 1444 1468 - -
Seca3g04219 1468 Coils Coil 1165 1185 - -
Seca3g04219 1468 Coils Coil 1227 1261 - -
Seca3g04219 1468 CDD PIN_XRN1-2-like 39 274 - -
Seca3g04219 1468 Pfam Xrn1 helical domain 289 736 IPR041412 -
Seca3g04219 1468 PANTHER 5'->3' EXORIBONUCLEASE 1 905 IPR027073 -
Seca3g04219 1468 CDD E2F_DD 1225 1331 IPR032198 GO:0046983
Seca3g04219 1468 Gene3D - 1143 1216 IPR036388 -
Seca3g04219 1468 Pfam XRN 5'-3' exonuclease N-terminus 1 244 IPR004859 GO:0003676|GO:0004527
Seca3g04219 1468 MobiDBLite consensus disorder prediction 1349 1385 - -
Seca3g04219 1468 SUPERFAMILY "Winged helix" DNA-binding domain 1149 1212 IPR036390 -
Seca3g04219 1468 SMART E2F_TDP_2 1149 1214 IPR003316 GO:0005667|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04219 Seca-Chr3 81787585 81800399 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04219 1003 1467 E2F-DP Transcription Factor Family AT5G22220 54.747 4.63e-144 447
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca3g04219 XRN_M 4.9e-160 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04219 - - gsj:114379404 1169.07