Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04217 ATGTCTTCCAACAAGAAAAATCTTCTGAAAACAGTATTCACAGCAAATGGAAGCTGTGGCTGTGGCAAAAGCAAAGCAATTGAAGTACACGAACCCACCCCAATACTCAAAAACTCCAACTTTCACCAAAAGACAAATCCAAGTAGCAAGGCTTCCTCCACCACCACTTCAAGGGAACCAAACGGTGCTCTCTCTATGGATGATGATGATGATGATTTCACCTCCACCACCATCTCTGAACCTGAGACCATAACCACTCATCATGACCATAACATCAAGAGCCCCATGAACTACTCTGTTCCAAAACAGAGTCCACTCATAAACAGTGTGGCAATTGAGAAGGACTCTGAGGACCCATATCATGATTTCAGGCATTCTATGCTTCAAATGATATTTGAGAAGGAGATTGACTCAGAAGATGATCTTCAAGATCTTCTCCAATGCTTTCTTCATCTTAATGCTACATGTCACCACCATGTCATCCTTAAAGCCTTCAAGGAGATCTGTGAAGAGGCATTCCCTGATAAGGTTAGTACTAGTGCTACCCCTGTTGTGGCTGAACCTTCTCCTTCTCACAGGAACATCATTCGAAAGAGTCACTGA 603 0.4295 MSSNKKNLLKTVFTANGSCGCGKSKAIEVHEPTPILKNSNFHQKTNPSSKASSTTTSREPNGALSMDDDDDDFTSTTISEPETITTHHDHNIKSPMNYSVPKQSPLINSVAIEKDSEDPYHDFRHSMLQMIFEKEIDSEDDLQDLLQCFLHLNATCHHHVILKAFKEICEEAFPDKVSTSATPVVAEPSPSHRNIIRKSH. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04217 200 ProSiteProfiles OVATE domain profile. 112 171 IPR006458 -
Seca3g04217 200 MobiDBLite consensus disorder prediction 34 100 - -
Seca3g04217 200 MobiDBLite consensus disorder prediction 36 62 - -
Seca3g04217 200 NCBIfam uncharacterized plant-specific domain TIGR01568 110 169 IPR006458 -
Seca3g04217 200 MobiDBLite consensus disorder prediction 179 200 - -
Seca3g04217 200 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 21 - -
Seca3g04217 200 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 39 172 IPR038933 GO:0045892
Seca3g04217 200 Pfam Transcriptional repressor, ovate 116 171 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04217 Seca-Chr3 81779441 81780043 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Seca3g04217 Ovate 1.4e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04217 - - gmx:102660065 244.588