Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04170 ATGGAAGATCTACCACCTGGTTTTCGCTTCTTCCCAACTGAAGAAGAGTTAGTTGGCTTCTACCTACACAACAAACTAGAAGGGCAAGGAAACTCCATAGACAGAGTTATCCCAGTCATTGACATCAATGGGGTAGAGCCCTGGAACCTTCCAACACTTGCAGGGGCACTTTGTCGAGGGGACAAGGAGCAATGGTTTTTCTTTTCACCAGGTCAAGAGAGGGAAGCTAGGGGAGGCAGACCCAACAGGACCACAGCTTGTGGGTATTGGAAAGCAACAGGTTCTCCTGGATACGTTTACTCTTCTGACAACAAAGCCATTGGGGTGAAGAAAACCATGGTCTTCTACAAAGGGAAAGCTCCTACTGGAAGGAAAACTAAATGGAAGATGAATGAGTACAAAGCCATCCAAGTCTCTAATCAATCCAACACAGCAACCCCTCAGTTGAGGAGGGAATTCAGCTTGTGCCGGGTCTATGTCATATCGGGAAGCTTTCGAGCATTTGATAGACGCCCATTAGAGAAGGAAGGAGAACTAAAATCGCAGGTTGGGAACACATTTACTGCCACATGTACTGAGCAGGCTGCTAGTAGATTGGATGGATCAAGTTCATCTGAAACTTCCCACTTAAGGGGACTCCTTAGTGTTCATCTGCCAGAGGCTGGAGGCTCAAGTACCACTAATTGGAATGTAAATAATAATGAGGTCCAACTCCAGGAACCGCTATGGGGAGGATGGGAATGGGAACAACTTAATTGGCTCTAG 765 0.4667 MEDLPPGFRFFPTEEELVGFYLHNKLEGQGNSIDRVIPVIDINGVEPWNLPTLAGALCRGDKEQWFFFSPGQEREARGGRPNRTTACGYWKATGSPGYVYSSDNKAIGVKKTMVFYKGKAPTGRKTKWKMNEYKAIQVSNQSNTATPQLRREFSLCRVYVISGSFRAFDRRPLEKEGELKSQVGNTFTATCTEQAASRLDGSSSSETSHLRGLLSVHLPEAGGSSTTNWNVNNNEVQLQEPLWGGWEWEQLNWL. 255
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04170 254 SUPERFAMILY NAC domain 3 159 IPR036093 GO:0003677|GO:0006355
Seca3g04170 254 Gene3D NAC domain 13 164 IPR036093 GO:0003677|GO:0006355
Seca3g04170 254 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 3 189 - -
Seca3g04170 254 Pfam No apical meristem (NAM) protein 5 134 IPR003441 GO:0003677|GO:0006355
Seca3g04170 254 ProSiteProfiles NAC domain profile. 4 161 IPR003441 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04170 Seca-Chr3 79881723 79883241 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04170 2 253 NAC Transcription Factor Family AT5G22380 55.642 2.62e-88 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca3g04170 NAM 1.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04170 - - cam:101497878 388.652