Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04157 ATGGGTGAGGGTGATGAAATAACATCAGAAAATAATAGTCTTGCATGTATACAAAGTGAAGAACCTTATACCCCACATGATGTCGATACTTCATTAACAGTATGTGATATACTTTTTGAACCACAAGAGGGAATGTCATTCAAATCTGTGGAGGAATTCAAAGACTTTTACAAAAAATATGCCTTTCAACAAGGGTTTGGTTTTGTGATAAGAACCTCAAGAAAGAACTCTTCTGGCTGTGTTTGTAACCTTGTATTAGCATGTGCTCGCCAAGGACACAACAAATCAACCGTGAAGAACTCTTTCAAAAGTGTGTCATCAATCAAAGCTGATTGTGGAGCACATGTTACTGCTTGCTTGAAGTCTGATGGGTTGTATTACATGACCAAGGTCATTCTTCATCATTCTCATGATCTGAGCCCAAGCAAAGCAAGATTATTCAAGTCAAACAAAGAGATGAGCATGCATGTAAGGAGAGTCTTGGATGTCAATGATAGGGAAAGGCGAGCAATTGGCAAAGGGGGTGATGGTGAGGCTCTCAAGTGCTATTTTGCTAGGATGCAAGAGCAAAATAGTGACTTTTTCTACGACATTGATTTGGATAATGATTTTCATATTAGAAATGTGTTTTGGGCATATGCAAGAAGTAGGGCAGCATATGTGTCATTTGGTGATGTGATTACATTTGATACAACTTATCTTACAAATAAGTATGATATGCCATTTGCTGCATTTGTTGGGGTTAATCATCATGGCCAATCGAAGGTACCCCAAAAGCTTTCAAGGCATAGTGAATATATTGCAGTTGTTTCTCAATTACAAGCTGCAATTTACGATACATACACAACAGCTGAGTTTGAAGAACAGTGGGAAAAGGTGATTAATAAATATAATTTGGAAAAGAATGATTGGCTTAGGGGTTTGTATGCTGAACATCATCGGTGGATACCTATATTCTTGAAACATCATTTTTGGGCAGGAATGTCAACTACACAACGTAGTGAGAGTATTCATGCTTTCTTTGATGGATATGTCCACCATTCAACTACCTTGGAGCAATTTGTTAACCAATATGACAATGCGCTTCAAGACAGGGCAGAAAAGGAGTTCCAAGCTGATTTTCAATCTCTAAATAGCACAGTGTCTTCTAATACAAAGTCTCCAATTGAAAGACAATTTCAAGCAAATTATACTCAAAAAATTCAAAGAGTGGAGGACATGGTTTTTGGGGATAAACCTAAAGAAGTTGACTTTATTGTGGTGTTTAATAGAGAAAACCATGATATCAAGTGTAAATGCTTGTTATTTGAATTTCGAGGCATCATGTGTAGGCATTCTCTTGCTGTGCTTGGTATAGAAAGGGTGAAAGAAGTGCCTTCTAAGTATGTTTTATCAAGGTGGAGCAAGAACATGAAAAGAAGACAGACATATATTAAGAGTAGCTATGATGTTAAGCAATTAAAGCCTCAAATGCAAAGATTTGATGAATTATGTAAGAACTTTTATGAAGTTGGTGAAGTCGCTGCAGAATATGAAGACACGACCAATTTTCTACAAGAGTTGTTACATGAAGCAATGAGCAAATTGAAGGTTATGATTGCATCTAGTAAACAGACTCAAATATGCATTGTTCGTCCTACTTGCAATGTTAATGTAATTTGTGACACGCCAATGGTGAGTGAAACCATTCATAGTCCAAAGGCAGTACGTCGTGTAGGTCGCCTTGCTTCAAAAAGGAAAGTCTCAATACTTGAGAAAGCTATCAAAAGTTCGAAGAACAGAAGGAAGACGATGAAATCCAATCAAATGCAACAGCAAATGGGTGTAAATGTTGGTGAGGAATGCCATGGTCAAATTGTCTCTACAGATGGTAGCTTTGTTTCATTATTGTCAAGCTTCCAAGGGAGTGGAGTTGGAGCTTTGACAAATTACTTTCCTCAGCCATAG 1947 0.3744 MGEGDEITSENNSLACIQSEEPYTPHDVDTSLTVCDILFEPQEGMSFKSVEEFKDFYKKYAFQQGFGFVIRTSRKNSSGCVCNLVLACARQGHNKSTVKNSFKSVSSIKADCGAHVTACLKSDGLYYMTKVILHHSHDLSPSKARLFKSNKEMSMHVRRVLDVNDRERRAIGKGGDGEALKCYFARMQEQNSDFFYDIDLDNDFHIRNVFWAYARSRAAYVSFGDVITFDTTYLTNKYDMPFAAFVGVNHHGQSKVPQKLSRHSEYIAVVSQLQAAIYDTYTTAEFEEQWEKVINKYNLEKNDWLRGLYAEHHRWIPIFLKHHFWAGMSTTQRSESIHAFFDGYVHHSTTLEQFVNQYDNALQDRAEKEFQADFQSLNSTVSSNTKSPIERQFQANYTQKIQRVEDMVFGDKPKEVDFIVVFNRENHDIKCKCLLFEFRGIMCRHSLAVLGIERVKEVPSKYVLSRWSKNMKRRQTYIKSSYDVKQLKPQMQRFDELCKNFYEVGEVAAEYEDTTNFLQELLHEAMSKLKVMIASSKQTQICIVRPTCNVNVICDTPMVSETIHSPKAVRRVGRLASKRKVSILEKAIKSSKNRRKTMKSNQMQQQMGVNVGEECHGQIVSTDGSFVSLLSSFQGSGVGALTNYFPQP. 649
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04157 648 Pfam SWIM zinc finger 428 450 IPR007527 GO:0008270
Seca3g04157 648 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 39 530 IPR031052 GO:0006355
Seca3g04157 648 ProSiteProfiles Zinc finger SWIM-type profile. 418 454 IPR007527 GO:0008270
Seca3g04157 648 SMART 26again6 429 456 IPR006564 GO:0008270
Seca3g04157 648 Pfam FAR1 DNA-binding domain 55 140 IPR004330 -
Seca3g04157 648 Pfam MULE transposase domain 226 254 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04157 Seca-Chr3 79581788 79584220 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca3g04157 FAR1 1.8e-11 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04157 - - psat:127130074 473.011