Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04153 ATGCCACGGGGAAAGTCAAATTCTTCATCAGTTGCTAAGCCATCTGAACCTGAAAAGCCAGTTGAATCTGATGAGAAAATCGATTTTGATGAGGCAAATGATCCTGAGGAAGCAATGGAAGAAGAAATTGAATATGAAGAAGTAGAAGAGGAGGAGGAGGAAGAAGAAGAAGAAGTGGAAGAAATAGAAGAGGAGGTTGAAGAGGTGGAAGAAGAGGAGGAGGAACCAGAGGAGGTAGAAGTAGAGGAAGAGGAAGAGGAGGAGGAAGAGGAGGAGGAGGAAGAGGAAGAAGTGGAAGAAGATGATGCCATGCAAAATCATAGCAGTGATGAGGCCAAGGTGGAAGATAAGGATGAGAAAAAAAAGCATGCTGAACTTCTTTCTCTTCCTCCTCACGGGTCTGAAGTTTACATTGGTGGCATTCCTCACGATGCCTCAACTGAGGATTTGAAAGCCTTTTGTGAGCATATTGGGGAAGTTGTAGAGGTTCGAGTAATGAAAGGAAAAGATTCTTCTGAGAATAAGGGCTTTGGTTTTGTGACTTTTAGAAATGTGGAATTGGCATCTAAAGCCATTGAAGAGCTTAATAATACAGAATTTAAGGGTAAAAAAATAAAATGCTCGACATCTCAAGCAAAAAACCGTCTTTTTATTGGCAATGTTCCTAGAAGCTGGGGTGATGAAGATCTGAGGAAGATTGTGACTGAGATTGGACCTGGTGTTACCACTGTAGAACTAGTCAAGGCTGTGAATAACACTAGCAATAACCGTGGCTTTGCTTTTATTGACTATCATAATCATTCATGTGCTGAATATTCAAGGCAAAAGATGATGAGCCCAACATTTAAGCTAGGTGGCAATGCTCCAACAGTGAGCTGGGCTGACCCTAAACATTCCGATTCCTCTGCTGCATCTCAGGTGAAGGCAGTATATGTGAAGAATCTTCCTAAGAATGTAACTCAAGAGCAGTTGAAGAAGCTTTTTGAACACCATGGGAAGATCACAAAGGTGGTTCTTCCACCAGCAAAGTCTGGACAGGAAAAGAACAGAATCGGCTTTGTACATTTTGCAGAGAGATCAAATGCTATGAAAGCACTTAAAAACCCTGAAAGATATGAATTAGAAGGTCAAATTTTAGAGTGCTCTCTAGCAAAGCCACAGGCTGATCAAAGGTCTGGAGTATCAAATACACAGAAGCAAGGATTGCTTCCAAGTTATCCACCACGTGTTGGTTATGGTTTGGGTGGTGGTGCCTATGGTGCACTTGGGGCAGGATATGGTGCTCCAGGTCTTGCACAGGTGACTTGTGCATTTCTGTGCTTGTTTCCGGACATGAAATTATTCTTGTATGGTCTTCCTTTTGTTTCAACATAA 1374 0.4207 MPRGKSNSSSVAKPSEPEKPVESDEKIDFDEANDPEEAMEEEIEYEEVEEEEEEEEEEVEEIEEEVEEVEEEEEEPEEVEVEEEEEEEEEEEEEEEEVEEDDAMQNHSSDEAKVEDKDEKKKHAELLSLPPHGSEVYIGGIPHDASTEDLKAFCEHIGEVVEVRVMKGKDSSENKGFGFVTFRNVELASKAIEELNNTEFKGKKIKCSTSQAKNRLFIGNVPRSWGDEDLRKIVTEIGPGVTTVELVKAVNNTSNNRGFAFIDYHNHSCAEYSRQKMMSPTFKLGGNAPTVSWADPKHSDSSAASQVKAVYVKNLPKNVTQEQLKKLFEHHGKITKVVLPPAKSGQEKNRIGFVHFAERSNAMKALKNPERYELEGQILECSLAKPQADQRSGVSNTQKQGLLPSYPPRVGYGLGGGAYGALGAGYGAPGLAQVTCAFLCLFPDMKLFLYGLPFVST. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04153 457 MobiDBLite consensus disorder prediction 105 121 - -
Seca3g04153 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 308 386 IPR000504 GO:0003723
Seca3g04153 457 PANTHER HETEROGENEOUS NUCLEAR RIBONUCLEOPROTEIN 15 409 - -
Seca3g04153 457 SMART rrm2_1 135 208 IPR003954 GO:0003676
Seca3g04153 457 CDD RRM_SF 136 208 - -
Seca3g04153 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 134 212 IPR000504 GO:0003723
Seca3g04153 457 SMART rrm1_1 215 292 IPR000504 GO:0003723
Seca3g04153 457 SMART rrm1_1 135 208 IPR000504 GO:0003723
Seca3g04153 457 SMART rrm1_1 309 382 IPR000504 GO:0003723
Seca3g04153 457 SUPERFAMILY RNA-binding domain, RBD 131 299 IPR035979 GO:0003676
Seca3g04153 457 Coils Coil 36 106 - -
Seca3g04153 457 Gene3D - 68 214 IPR012677 -
Seca3g04153 457 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 215 295 - -
Seca3g04153 457 Gene3D - 215 295 IPR012677 -
Seca3g04153 457 FunFam RNA-binding (RRM/RBD/RNP motifs) family protein 297 406 - -
Seca3g04153 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 136 206 IPR000504 GO:0003723
Seca3g04153 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 216 277 IPR000504 GO:0003723
Seca3g04153 457 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 310 377 IPR000504 GO:0003723
Seca3g04153 457 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 214 296 IPR000504 GO:0003723
Seca3g04153 457 MobiDBLite consensus disorder prediction 27 104 - -
Seca3g04153 457 MobiDBLite consensus disorder prediction 1 121 - -
Seca3g04153 457 Gene3D - 296 425 IPR012677 -
Seca3g04153 457 SUPERFAMILY RNA-binding domain, RBD 301 416 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04153 Seca-Chr3 79567221 79573515 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04153 141 410 Eukaryotic Initiation Factors Gene Family AT4G34110 25.667 6.23e-12 65.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04153 K13161 - gmx:100785076 558.14