Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04148 ATGTACCAACATCAAGGAAAGAACATCCATTCTTCTTCCAGAATGTCAATCCCTTCTGAAAGGCACATGTTGATTCAAACAGGAAATGGGTCTGGTGATTCTGGACTAGTCCTCTCAACTGATGCTAAACCTAGATTGAAATGGACAACAGATCTTCATGCCAGGTTTATAGAAGCTGTGCATCAGTTAGGTGGAGCTGACAAGGCAACTCCAAAAACTGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTATATCATCTGAAGAGTCATCTTCAGAAGTACAGATTGAGCAAGAATCTGCATGGACAAAGTAACAACGTGACACACAAAATCAGTGCAGCAACAGGAGAAAGCCTCTCTGAAAACAATGGAACTCATGTGAACAATTTAAACCTAGCCCCTCAGTCTAACAACAGAGATTTACACATAAGTGAGGCACTGCAGATACAGATAGAGGTGCAGAGAAGACTAAATGAACAACTTGAGTTCTCTTACCCAATTCAGGTGCAAAGACTCCTGCAGCTCCGGATAGAGGCCCAAGGAAAATACCTGCAGTCTGTGCTAGAGAAAGCTCATGAAACGCTTGGTAGAGAGAATTTGGGAATGGTAGGACATGAAGCTGCTAAAGTTCAACTTTCAGAACTAGTGTCCAAAGTATCCACTCAGTGCCTGAATTCAGCATTTTCAGAGCTGAAGGAGTTACAAGGATTGCAAACACAAAACAACCAGCCAACTGATTGCTCTATGGACAGTTGTCTCACATCATGTGATGGATCACAAAAGGAGCAACATATACAAAATGGGAGGATGGTCTTAAGACCCTTCAATTGCCACACATTCATGGAACAAAAGGAAGTCATAGAAGCTCCCAATCCCAACCTACAGAACTCTGACCTCAAGTGGTGTGATCCAGTGAAAAAGAACACCTTTCTTACCCCATTAAACAAGAATGCTGAAAGAAGAAGTTGTTTTGTAGAAAGAAGTCCAAGCAACTTATCTATGAGCATTGGACTAGAAGGACAAACAGAGAATGGGGGCAGTATGTATCCTGAGAAAATAATCACAGGGAGACAGACAGATGGTGAATTCCAACACAGAACAGAATCAATGAAGCCAATGACTGAAAAGGGTTCTCAAGATTATAGGTTTCCTTCTTACTTTGCATCAACAAGACTAGACCTAAGAACTGAAGATAATGGGGATGCAGGGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAGCTGA 1254 0.4187 MYQHQGKNIHSSSRMSIPSERHMLIQTGNGSGDSGLVLSTDAKPRLKWTTDLHARFIEAVHQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQKYRLSKNLHGQSNNVTHKISAATGESLSENNGTHVNNLNLAPQSNNRDLHISEALQIQIEVQRRLNEQLEFSYPIQVQRLLQLRIEAQGKYLQSVLEKAHETLGRENLGMVGHEAAKVQLSELVSKVSTQCLNSAFSELKELQGLQTQNNQPTDCSMDSCLTSCDGSQKEQHIQNGRMVLRPFNCHTFMEQKEVIEAPNPNLQNSDLKWCDPVKKNTFLTPLNKNAERRSCFVERSPSNLSMSIGLEGQTENGGSMYPEKIITGRQTDGEFQHRTESMKPMTEKGSQDYRFPSYFASTRLDLRTEDNGDAGSCKQLDLNGFSWS. 418
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04148 417 NCBIfam myb-like DNA-binding domain, SHAQKYF class 43 98 IPR006447 GO:0003677
Seca3g04148 417 FunFam Myb family transcription factor 42 100 - -
Seca3g04148 417 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 5 276 IPR044848 GO:0003700
Seca3g04148 417 Pfam Myb-like DNA-binding domain 45 96 IPR001005 -
Seca3g04148 417 Gene3D - 42 100 - -
Seca3g04148 417 SUPERFAMILY Homeodomain-like 42 98 IPR009057 -
Seca3g04148 417 Pfam MYB-CC type transfactor, LHEQLE motif 143 195 IPR025756 -
Seca3g04148 417 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 40 100 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04148 Seca-Chr3 79360846 79364258 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04148 75 417 G2-like Transcription Factor Family AT3G04030 49.429 4.58e-90 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca3g04148 Myb_CC_LHEQLE 3.1e-19 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04148 - - gmx:100810396 606.29