Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04146 ATGTCATGGTGCTTATATGTGGATTTTGTAGGTGGAATGTACCAACATCAAGGAAAGAACATCCATTCTTCTTTCAGAATGTCAATCCCTTCTGAAAGGCACATGTTGATTCAAACAGGAAATGGGTCTGGTGATTCTGGACTAGTCCTCTCAACTGATGCTAAACCTAGATGGAAATGGACAACAGATCTTCATGCCAGGTTTATAGAAGCTGTGCATCAGTTAGGTGGAGCTGACAAGGCAACTCCAAAAACTGTAATGAAACTCATGGGGATTCCAGGGCTTACCTTATATCATCTGAAGAGTCATCTTCAGACTCTTCAGGTAAAATTAACTAGTAATCTGTATTATGGCCCTTTAATTACAAGATTGAGCAAGAATCTGCATGGACAAAGTAACAATGTGACACACAAAATCAGTGCAGCAACAGAAGAAAGCCTCTCTGAAAACAATGGAACTCATGTGAACAATTTAAACCTCGCCCCTCAGTCTAACAACAGAGATTTACACATAAGTGAGGCACTACAGATGCAGATAGAGGTGCAGAGAAGACTAAATGAACAACTTGAGGTGCAAAGACTCCTGCACCTCCGGATAGAGGCCCAAGGAAAATACCTGCAGTCTGTGCTAGAGAAAGCTCATGAAACGCTTGGTAGAAAGAATTTGGGAATGGTAGGACATGAAGCTGCTAAAGTTCAACTTTCAGAACTAGTGTCCAAAGAAACGGTAACAACAATTGATTCCCTCATTAACAACTCTGACCTCAAGTGGTGTCATCCAGTGAAAAAGAACACCTTTCTTACCCCATTAAGCAAGAATGCTGAAACAAGAAGTTATGTTGTAGAAAGAAGTCCAAGCAACTTATCTATAAGCATTGGACCAGAAGGACAAATAGAGAATGGGGGCAGTATGTATCCTGAGAAAATAATCACAGGGAGACAGACAGATGGTGAATTCCAACACAGAATAGAATCAATGAAGCCAATGACTGAAAAGGGTTCTCAAGATTATAGGTTTCCTTCTTACTTTGCATCAACAAGACTAGACCTAAGAACTGAAGATAATGGGGATGCAGGGAGTTGTAAACAACTGGACTTGAATGGATTCAGTTGGAGCTGA 1119 0.4066 MSWCLYVDFVGGMYQHQGKNIHSSFRMSIPSERHMLIQTGNGSGDSGLVLSTDAKPRWKWTTDLHARFIEAVHQLGGADKATPKTVMKLMGIPGLTLYHLKSHLQTLQVKLTSNLYYGPLITRLSKNLHGQSNNVTHKISAATEESLSENNGTHVNNLNLAPQSNNRDLHISEALQMQIEVQRRLNEQLEVQRLLHLRIEAQGKYLQSVLEKAHETLGRKNLGMVGHEAAKVQLSELVSKETVTTIDSLINNSDLKWCHPVKKNTFLTPLSKNAETRSYVVERSPSNLSISIGPEGQIENGGSMYPEKIITGRQTDGEFQHRIESMKPMTEKGSQDYRFPSYFASTRLDLRTEDNGDAGSCKQLDLNGFSWS. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04146 372 Pfam Myb-like DNA-binding domain 59 107 IPR001005 -
Seca3g04146 372 Pfam MYB-CC type transfactor, LHEQLE motif 170 216 IPR025756 -
Seca3g04146 372 Coils Coil 172 192 - -
Seca3g04146 372 SUPERFAMILY Homeodomain-like 54 111 IPR009057 -
Seca3g04146 372 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 52 112 IPR017930 -
Seca3g04146 372 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL11 17 263 IPR044848 GO:0003700
Seca3g04146 372 Gene3D - 54 111 - -
Seca3g04146 372 NCBIfam myb-like DNA-binding domain, SHAQKYF class 55 107 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04146 Seca-Chr3 79316837 79327115 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04146 21 244 G2-like Transcription Factor Family AT4G13640 45.455 1.36e-55 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Seca3g04146 Myb_DNA-binding 4.4e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04146 - - lang:109351719 412.535