Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04138 ATGGCGAGCCAAAGAATAGGAGAAACTGGTTTGTCTGAATCAGGGCCTTCAAGTCACCATGTCCCTTATGGAGTTCTTCATGGAATTAGTACCCCAGCATCAGGCTTAATAAATCAAGGGTCTGCTTTTGATTTTGGAGAGCTGGAAGAGGCAATTGTTCTGCAAGGAATTAAGATTAGAAATGATGAATCCAAAGCACCTTTATTCACAGGCAGACCTGCAGCTACACTGGAAATGTTCCCTTCATGGCCAATGAGATTCCAACAAACCCCAAGAGGAGGTTCAAAGTCAGGAGGTGAAAGCACTGATTCAGAAACGGAGTTTCAGTTTGAAACAGATTCTCCCATCAGTATAAAAGCATCTTCTTCAGATCATCAGGCTTTTGATCAGCATCATCACCTGCAGCTTCAACAGATTCAACAGGAGACTGCAATTGATGCATCAAGAACAGACCCTTCATCACAGAATCAACCAGAAGCTAAATCATCTCAACAGAGGAAGGGAGCTGGTTCCACATCAGAAAAGACACTTGATGCAAAGACACTGAGACGTTTAGCTCAAAACAGAGAGGCTGCAAGGAAAAGCCGTCTAAGGAAAAAGGCTTATGTGCAACAATTAGAAACAAGTAGATTAAAGCTCACCCACCTTGAACAAGACCTTCAAAGAGCGCGTGCTCAGGTTCTCGGACTGTTGTTGGGTTGTGGTGTTGCTGGTGGCAATATAAGCTCTGGAGCTGCAATGTTTGACATGGAGTATGCAAGGTGGTTAGAAGATGATCAGCGGCACATGGCGGATCTCCGGACGGGGCTGCAGGCGGCGATGTCGGACAATGAACTCCGAGTGATAGTGGATGGATATCTGTCTCATTATGATGAGGTTTTCAGGCTCAAAGGGATGGCTGCAAAATCAGATGTATTTCACCTTATTAATGGCATCTGGACTTCCCCAGCTGAACGATGCTTCCTCTGGATAGGTGGTTTTAGACCCTCAGACCTCATCACAATGTTGATACAACAGTTGGAGCCCTTAGCGGAACAGCAAATAGTGGGCATATGTGGGCTAAGGCATTCGTCACTACAAGCAGAAGATGCACTCTCTCAAGGCCTTGAACAACTTCAACAGTCTCTTGTTGACACCATCGCCGGCGGGCCCATCGTTGACGGCGTGCAACAAATGGTTGTCGCCATGGGCAAGCTTGCCAACCTTGAAGGATTTCTCCGCCAGGCTGATAATTTGAGGCAACAGAGTCTTCACCAATTATGTAGAATACTAACAGTTCGTCAAGCAGCAAGGTGTTTTCTTGTGATTGGAGAGTATTATGGTCGTCTTCGAGCTCTTAGTTCTCTTTGGGCATCAAGACCACGAGAGAACTTGATCAACGATGATAACTCATGCCAAACAACAACGGAATTACAAATGGTTCAACCTTCTCAGAGTCATTTCTCCAATTTCTGA 1455 0.455 MASQRIGETGLSESGPSSHHVPYGVLHGISTPASGLINQGSAFDFGELEEAIVLQGIKIRNDESKAPLFTGRPAATLEMFPSWPMRFQQTPRGGSKSGGESTDSETEFQFETDSPISIKASSSDHQAFDQHHHLQLQQIQQETAIDASRTDPSSQNQPEAKSSQQRKGAGSTSEKTLDAKTLRRLAQNREAARKSRLRKKAYVQQLETSRLKLTHLEQDLQRARAQVLGLLLGCGVAGGNISSGAAMFDMEYARWLEDDQRHMADLRTGLQAAMSDNELRVIVDGYLSHYDEVFRLKGMAAKSDVFHLINGIWTSPAERCFLWIGGFRPSDLITMLIQQLEPLAEQQIVGICGLRHSSLQAEDALSQGLEQLQQSLVDTIAGGPIVDGVQQMVVAMGKLANLEGFLRQADNLRQQSLHQLCRILTVRQAARCFLVIGEYYGRLRALSSLWASRPRENLINDDNSCQTTTELQMVQPSQSHFSNF. 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04138 484 SMART brlzneu 176 236 IPR004827 GO:0003700|GO:0006355
Seca3g04138 484 Pfam bZIP transcription factor 179 220 IPR004827 GO:0003700|GO:0006355
Seca3g04138 484 Coils Coil 206 226 - -
Seca3g04138 484 Gene3D - 179 231 - -
Seca3g04138 484 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 183 198 IPR004827 GO:0003700|GO:0006355
Seca3g04138 484 PANTHER TRANSCRIPTION FACTOR TGA9 118 456 - -
Seca3g04138 484 ProSiteProfiles DOG1 domain profile. 245 453 IPR025422 GO:0006351|GO:0043565
Seca3g04138 484 MobiDBLite consensus disorder prediction 145 176 - -
Seca3g04138 484 Pfam Seed dormancy control 262 337 IPR025422 GO:0006351|GO:0043565
Seca3g04138 484 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 178 222 IPR004827 GO:0003700|GO:0006355
Seca3g04138 484 FunFam BZIP family transcription factor 179 229 - -
Seca3g04138 484 MobiDBLite consensus disorder prediction 88 110 - -
Seca3g04138 484 MobiDBLite consensus disorder prediction 81 110 - -
Seca3g04138 484 SUPERFAMILY Leucine zipper domain 182 226 IPR046347 GO:0003700|GO:0006355
Seca3g04138 484 MobiDBLite consensus disorder prediction 145 182 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04138 Seca-Chr3 79209730 79217944 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04138 132 484 bZIP Transcription Factor Family AT1G08320 68.451 4.20e-179 504
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca3g04138 DOG1 2e-29 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04138 K14431 - gmx:100101904 753.051