Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04125 ATGGGTTTGATGGAGTATGATGTAGAGAACAAGAATCTATACCTTCATCATCATACCCCAACTTTCATTGAGTGGCTCAAACCATCTTCTTCCCCTTCATATCTAACTTCCACAGTGTCTTCTTCTTCATCTTCATCATCTCCTTCTTATTCTTCTTTTGCTGCTACTCAGAGTGAGACTATCCAATTCTTTCCCATTTTGAGTGGAAAATTAGAGGAAGAGCATGGAATGGATGAGGTGGTGAAAGAAGAAAAGGTGGAACAAGCAGTGACTGTGGCTTTGCACATTGGATTGCCTGTTGAACAAGATGAGAAGAAGATGGTTTTCCATGTTAAGGAAGAAGAGACCTCAAAGAAAACCTTCCATGGCTGCACTAGTACTACTTTTAACACTACTGATCAGAGAAGGTTCTGGATACCAACTCCTGCTCAGATCCTTGTTGGGCCTATGCAGTTTGCTTGCTCCATATGCAGCAAAACCTTCAATAGGTATAACAACATGCAGATGCATATGTGGGGTCATGGGTCCGAATTTAGGAAAGGACCAGACTCACTTAAAGGAACACAACCAGCTGCAATGCTAAGGCTACCATGCTATTGTTGTGCCCAAGGTTGCAAGAACAACATCAATCATCCAAGAGCTAAGCCTTTGAAGGACTTTAGAACCCTCCAAACCCATTACAAGAGAAAGCATGGGACTAAACCATTCATGTGTAGGAAATGTGGGAAAACATTTGCAGTCAAAGGGGATTGGAGGACTCATGAGAAGAATTGTGGCAAGTTGTGGTATTGCACTTGTGGTTCAGACTTTAAGCACAAGAGATCTCTCAAAGATCATATAAGATCCTTTGGAAAAGGTCATAACCCACATCCTTCTCTTGAAGCTAATTTTGAGGAAGAGAAGGAATGCATTACTGGGTCTGATGAAGATGAGGTTGCTCATGTTGCATATGCATGA 957 0.418 MGLMEYDVENKNLYLHHHTPTFIEWLKPSSSPSYLTSTVSSSSSSSSPSYSSFAATQSETIQFFPILSGKLEEEHGMDEVVKEEKVEQAVTVALHIGLPVEQDEKKMVFHVKEEETSKKTFHGCTSTTFNTTDQRRFWIPTPAQILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPAAMLRLPCYCCAQGCKNNINHPRAKPLKDFRTLQTHYKRKHGTKPFMCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKGHNPHPSLEANFEEEKECITGSDEDEVAHVAYA. 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04125 318 SMART c2h2final6 236 256 IPR013087 -
Seca3g04125 318 SMART c2h2final6 199 231 IPR013087 -
Seca3g04125 318 SMART c2h2final6 152 174 IPR013087 -
Seca3g04125 318 ProSitePatterns Zinc finger C2H2 type domain signature. 154 174 IPR013087 -
Seca3g04125 318 FunFam Zinc finger protein WIP2 205 287 - -
Seca3g04125 318 Gene3D Classic Zinc Finger 232 295 - -
Seca3g04125 318 SUPERFAMILY beta-beta-alpha zinc fingers 138 175 IPR036236 -
Seca3g04125 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 236 256 IPR013087 -
Seca3g04125 318 Gene3D Classic Zinc Finger 151 174 - -
Seca3g04125 318 PANTHER ZINC FINGER PROTEIN WIP2 22 303 IPR043584 GO:0003700|GO:0010468
Seca3g04125 318 SUPERFAMILY beta-beta-alpha zinc fingers 222 256 IPR036236 -
Seca3g04125 318 ProSiteProfiles Zinc finger C2H2 type domain profile. 152 179 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04125 Seca-Chr3 78968192 78970891 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04125 15 305 C2H2 Transcription Factor Family AT1G08290 56.667 5.24e-122 352
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Seca3g04125 zf-C2H2_6 0.00014 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04125 - - gmx:100802773 493.041