LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca3g04115	ATGGGGTTTGCCAAAATTTTAAGTTTCATCCTTCTCTTGTTTGTTGGCTATACTTTGGTGAATGGATCCACCCCGAAGCATTATATAGTTTACATGGGAGATCACTCACACCCCAATTCAGAATCCGTAATCAGAGCAAACCATGAGATGCTAGCTTCAGTCACTGGAAGTCTCAGTGAAGCAAAGGCAGCAGCACTCCACCATTACAGTAAAAGCTTTCGAGGCTTCTCGGCCATGATTACGCCAGAGCAAGCTAATAAACTTGCAGAATATAACTCAGTCGTGTCCGTTTTTGATAGCAAAATGAATAAGCTCCACACAACACATTCTTGGGATTTTCTTGGATTAGACTCAGCCTACAAGAGCAACAGTGTTGCTCTGGACTCTGCATCCAATGTCATTGTTGGTGTCATTGACTCTGGGGTGTGGCCCGAATCAGAAAGCTTCACAGATTATGGATTAGGTCCTGTGCCCAAGAAATTCAAAGGAGTGTGTGTTACTGGTGACAATTTTACACTAGCCAACTGCAACAAGAAAATTATTGGTGCCCGGTTCTATTCAAAAGGGTTTGAAGCAGAAACTGGTCCTCTGGAAGATGTTGTTAACAAGATTTTCTTCAGGTCAGCTCGAGATAGCGATGGACATGGAACACACACTGCTTCTACGATTGCAGGATCCATTGTTGCTAATGCCAGCTTATTTGGTATGGCCAAAGGAACTGCTAGAGGTGGTGCCCCAAGTGCCAGACTTGCCATCTACAAGGCCTGTTGGTTTGGCTTTTGCAGTGATGCTGATGTTCTTTCTGCCATGGATGATGCCATTCATGATGGGGTTGACATACTATCTCTTTCCCTTGGCCCTGATCCTCCTCAGCCAATTTACTTTGAGAATGCAATCAGTGTAGGAGCATTCCATGCATTCCAAAAGGGAATTCTTGTTTCTGCTTCAGCTGGAAACTCAGTTTTTCCACGTACTGCATGCAATGTTGCTCCTTGGATCCTCACTGTTGCTGCTAGCACAGTAGACAGGGAATTCAGATCAAACATCTACCTTGGTAATTCAAAAGTTCTAAAGGGTTTGTCTTTGAATCCAATAAAAATGGAACGTCCATATGGTCTGATATATGGAAGTGCCGCTGCAGCCACTGGAGTTTCAGCAACAAATGCAAGCTTCTGCAAGAACAATACACTAGATCCTACCTTAATCAAGGGTAAAATCGTGATCTGCACAATTGAAACATTCACTGATGACAGACGAGAGAAGGCCATAGTAATAAAAAAAGGTGGGGGTGTTGGAATGATACTTATTGATCATAATGCAAGAGATGTTGGTTTTCAGTTTGTCATTCCAAGCACACTCATTGGTCAGGATGCTGTAGAAGAGCTTCAAGCATATGTGAAGACAGAAAAGAATCCCATTGCTATAATCTATCCAACAGTAACTGTTGTTGGTACCAAACCTGCACCAGAAGCAGCAGCTTTCTCTTCCATGGGGCCAAATATAATAACACCAGATATTATTAAGCCTGACATCACAGGACCTGGAGTGAATATTTTGGCAGCATGGTCTCCAGTGGCAACTGAAGCCACAGTTGAACAACGATCTGTCAACTATAACATCATTTCAGGAACATCAATGTCTTGTCCACACATATCTGCAGTTGCAGCAATTATAAAATCTCAACACCCCTCTTGGAGTCCTGCAGCCATAATGTCTGCAATAATGACAACAGGTAAGTTGTTTATGCTATAG	1752	0.4281	MGFAKILSFILLLFVGYTLVNGSTPKHYIVYMGDHSHPNSESVIRANHEMLASVTGSLSEAKAAALHHYSKSFRGFSAMITPEQANKLAEYNSVVSVFDSKMNKLHTTHSWDFLGLDSAYKSNSVALDSASNVIVGVIDSGVWPESESFTDYGLGPVPKKFKGVCVTGDNFTLANCNKKIIGARFYSKGFEAETGPLEDVVNKIFFRSARDSDGHGTHTASTIAGSIVANASLFGMAKGTARGGAPSARLAIYKACWFGFCSDADVLSAMDDAIHDGVDILSLSLGPDPPQPIYFENAISVGAFHAFQKGILVSASAGNSVFPRTACNVAPWILTVAASTVDREFRSNIYLGNSKVLKGLSLNPIKMERPYGLIYGSAAAATGVSATNASFCKNNTLDPTLIKGKIVICTIETFTDDRREKAIVIKKGGGVGMILIDHNARDVGFQFVIPSTLIGQDAVEELQAYVKTEKNPIAIIYPTVTVVGTKPAPEAAAFSSMGPNIITPDIIKPDITGPGVNILAAWSPVATEATVEQRSVNYNIISGTSMSCPHISAVAAIIKSQHPSWSPAAIMSAIMTTGKLFML.	584

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca3g04115	583	ProSiteProfiles	Serine proteases, subtilase domain profile.	110	583	-	-
	Seca3g04115	583	Pfam	Peptidase inhibitor I9	27	105	IPR010259	-
	Seca3g04115	583	SUPERFAMILY	Subtilisin-like	105	577	IPR036852	GO:0004252\|GO:0006508
	Seca3g04115	583	PRINTS	Subtilisin serine protease family (S8) signature	130	149	IPR015500	-
	Seca3g04115	583	PRINTS	Subtilisin serine protease family (S8) signature	211	224	IPR015500	-
	Seca3g04115	583	PRINTS	Subtilisin serine protease family (S8) signature	542	558	IPR015500	-
	Seca3g04115	583	Gene3D	-	342	483	-	-
	Seca3g04115	583	CDD	PA_subtilisin_like	348	476	-	-
	Seca3g04115	583	Pfam	PA domain	388	462	IPR003137	-
	Seca3g04115	583	PANTHER	PROPROTEIN CONVERTASE SUBTILISIN/KEXIN	28	578	IPR045051	-
	Seca3g04115	583	Gene3D	Peptidase S8/S53 domain	132	579	IPR036852	GO:0004252\|GO:0006508
	Seca3g04115	583	Pfam	Subtilase family	131	577	IPR000209	GO:0006508\|GO:0008236
	Seca3g04115	583	Gene3D	Peptidase S8 propeptide/proteinase inhibitor I9	20	106	IPR037045	-
	Seca3g04115	583	CDD	Peptidases_S8_3	104	577	IPR034197	-
	Seca3g04115	583	ProSitePatterns	Serine proteases, subtilase family, serine active site.	543	553	IPR023828	-
	Seca3g04115	583	FunFam	Subtilisin-like protease SBT5.3	20	106	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca3g04115	Seca-Chr3	78846766	78851587	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca3g04115	3	577	Subtilisin-like Serine Gene Family	AT5G67360	45.798	9.25e-158	468

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca3g04115	-		-	gmx:100792672	1016.53