Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca3g04098 ATGAACGGCGACGGCCGGAGACGGGACTGGATAGACTCCAGGATATCCAAGAAGCAGAAGCTGATCCTCAACGCCGAGGAAGAGCTCGAGGCAAAGTTAGGGTTCAATCTTTTCTCAGAGGGCAATAAAAGACTTGGATGGTTGCTCACTTTTTCACCCTCATCTTTTGAGGATGAAGAGACCCACAAAGTCTACAGTTGCGTTGATCTTTACTTTGTTACACAGGATGGGTCCACATTCAAGTCAAAATACAGATTTCGCCCTTATTTTTATGCAGCTACAAAGGATAAAATGGAGATGGATGTTGAAGCATACCTGAGACGACGTTATGAAAGTCAGATTGCCAATATTGAAATTATAGAGAAGGAAGACCTGGATCTTAAAAATCATCTGTCTGGATTAAGAAAATCTTATTTAAAGCTTTCATTTGATACCGTGAAACATTTGATGAATGTGAAGAGTGACCTGATGCATGTTGTTGAAAGAAATAAGGCGAAGTCTGATGCTGCACAAGCCTATGAGGCCATATTAACTGGAAGAAGAGAACAAAAACCTCAAGATTTTCTAGATTGCATAATTGATCTTCGTGAATATGATGTTCCTTACCATGTTCGCTTTGCTATTGACAATGATATACGGAGTGGCCAGTGGTATGATGTTGGAGTGTCCAATAACGGGGTTACACTTGAGAAGAGGACAGATCTTCTGCAGCGTGCTGAAGTTCGTATTTGTGCATTTGACATTGAGACCACTAAACTTCCCTTAAAATTTCCTGATGCTGAGTATGATTTGATTATGATGATTTCATACATGGTTGATGGGCAAGGGTATTTAATCATAAATAGAGAGTGTGTTGGGGAGGACATAGAGGATTTAGAATACACTCCAAAACCAGAGTTTGAAGGGTATTTTAAGGTGACAAATGTTCAAAATGAGATTGAGCTTCTTAGATTATGGTTTTCTCATATGCAAGAGGTGAAACCTGGTATCTACGTGACATATAATGGTGATTTCTTTGATTGGCCATTCATGGAACGAAGGGCAGCCCATCATGGGTTCAAAATGAGTGATGAATTGGGGTTTCAATGTGACACGAATCAAGGGGAGTGTCGTGCTAAATTTGCTTGCCATTTGGATTGTTTTGCTTGGGTTAAACGTGATAGTTATCTCCCGCAGGGGAGCCAAGGCCTGAAGGCTGTAACAAAAGCAAAGTTGGGTTATGATCCATTGGAAGTGAACCCTGAGGACATGGTTCGCTTTGCAAAGGAAAAGCCTCAGATGATGGCCTCCTATTCTGTTTCTGATGCAGTGGCAACTTATTACTTATATACAACTTATGTCCATCCCTTTATTTTCTCTCTTGCAACCATTATACCCATGTCACCAGATGAGGTTTTGCGCAAAGGTAGTGGGACCCTCTGTGAAATGTTGCTTATGGTCCAGGCATACAAGGCTAATGTTATCTGCCCTAACAAGCATCAATCTGATCCAGAGAAGTTTTACAACAATCATCTTCTTGAGAGTGAGACGTACATAGGTGGCCATGTGGAATGCCTAGAAAGTGGTGTTTTTAGATCTGATATTCCATCTAGTTTTACACTTGAGCCATCTGCCTATGAGCAATTGATCAGCAACCTTGATCGAGATCTACAGTATGCTATAAGAGTAGAGGGTAAGATGGATTTGGAATCTGTCACCAATTATGATGAAGTAAAGAATGCTATCACGGAAAAGCTTGTAAAATTACGAGATGCACCGATACGTGATGAATGCCCCCTCATTTATCATCTGGATGTTGCTGCTATGTATCCAAACATAATTTTAACAAACCGGCTTCAGCCACCATCAATTGTTACGGATGAGATTTGCACTGCATGTGACTTTAACCGTCCTGGAAAGACTTGTCTACGCAAACTTGAGTGGGTTTGGCGCGGAGAAACATTCATGGCAAAGAAAAGTGACTATTATCATTTAAAGAAGCAGATTGAGTCAGAGCTTGTTGATGGTGCTAATGAGAGGTCATCAAAATCTTTTCTTGACCTACCCAAGTCAGAGCAACAATCAAGACTGAGAGAGCGTTTAAAGAAATATTGCCAGAAGGCATATAAGCGGGTACTTGACAAACCAGTTACTGAACTTCGTGAAGCAGGAATTTGCATGCGTGAAAATCCATTTTATGTGGACACTGTTCGCAGTTTCCGGGATAGAAGATATGAATATAAGGGCCTTAATAAGGTTTGGAAGGGAAAACTAGCAGAGGCCAAGGCCAGTGGAAATACTATAAAGATCCAGGAAGCACAAGATATGGTAGTGCTTTATGATTCATTGCAACTCGCTCACAAGTGTATACTTAATTCCTTTTATGGATATGTCATGCGCAAGGGTGCAAGATGGTACTCCATGGAAATGGCTGGCGTAGTCACATATACTGGTGCAAAAATTATTCAGAATGCCCGCTTGCTGGTAGAGAAAATAGGGAAACCACTTGAACTAGACACAGATGGTATCTGGTGTGCACTTCCTGGATCTTTTCCAGAAAATTTCACTTTTAAAACAAAAGACTCAAAGAGGAAGTTGACAATCTCATACCCTTGTGTTATGCTTAATGTTGATGTGGCAATAAATAATACAAATGATCAGTACCAGACACTCGCAGATCCAATTAAGAAAACTTATACAATTCATAGTGAATGCTCTATTGAGTTTGAGGTGGATGGACCATACAAGGCAATGATCATTCCTGCTTCCAAGGAGGAAGGGATTTTAATTAAGAAGCGATATGCTGTTTTTAATGATGATGGAACCCTTGCAGAGCTGAAAGGTTTTGAGATCAAGCGCAGGGGTGAACTGAAGCTAATAAAAGTTTTCCAGGCTGAACTTTTCGACAAGTTTCTGCATGGCTCAACCTTAAAGGAATGCTATTCTTCCGTTGCTTCAGTGGCAAACCGCTGGCTTGATCTTCTTGATAACCAAGGAAAGGATATTGCAGATAGTGAGTTGCTTGATTATATATCAGAATCAAGTACCATGAGCAAGTCTTTAGCTGATTATGGTGAACAGAAGTCTTGTGCTGTTACCACTGCTAGACGTCTTGCTGACTTTCTTGGTGATACAATGGTCAAAGATAAAGGTCTTCGATGTCAGTACATAGTAGCAAGTGAACCTAAGGGAACACCAGTAAGTGAGCGTGCTGTTCCTGTGGCAATTTTTGAAACTGATGCTGAAGTAATGAAATTCTATGTCCGAAAATGGTGCAAGGTCTCATCTGATGTTGGCATTCGATCCATAGTTGACTGGTCCTATTATAAGCAGCGGCTTAGTTCTGCAATTCAAAAAATTATCACTATTCCTGCTGCAATGCAAAAGGTTGCAAATCCTGTCCCTAGGGTAGCTCATCCTGATTGGTTGCATAAGAAGGTCCGTGAGAAGGAGGACAAGTTTCGCCAACGAAAATTAGTTGATGCCTTTAATTCAATGAACAAGAATAAAAAGCATAATGATTCTAATGGTGTCCGCCTTGTGATGGATAATGAAACTGTTAATGACTTGGAGGACTTTGGAAACAAGGGCAGGAATTCTACATGCGGACCTAGACCAATTATACGGCAGTATGAAGCTAATAATGAACGGCATTCAATGGAGCCCAACGGTCAAGATGATTTGGAGCAACGACATAATGATCGTGGCGGCATGGATCAGCAACTTTCACCATTGCAACAAAATGAAATATCGTGTGAAAACGTTGACAGGACTGTAGATTATCAAGGATGGCTTCAAATAAAGAAGAGAAAGTGGAAAGTTATGCTGGAAAGGAGAAAGAAGCGAAGATTGGTATTAAGGAAGAGTGTTGATTTTTTCAGATTGGAGAAATCTGACCATTTAAATGGCATTCTTGAACCACTGAATGGTAATATTAAACAGGGCAGGGGTAATGTCAGTTCATACATGATAAGCCCTGAGGACTACCTAACTCAGTACCACTGGCAGATAATACAGCTAGTTCACAGTTCACAGACTGGCCAAATTTCTGCTTGGGTTATTGTTGCTGGGTTTATGTGTATGATTCCTGTTTCTGTTCCTAGAGTCTTTTACCTCAATTCTAAATCACCAATTACTGAATTTTGGGTTAAACGTGTCAACAAGACTCTTCCTCATGGAAGACCTAGTTATAACCTGTATGAGGTAGTGACACCTAAAGTTCAAAATATTGAAGCAGACAAAAAACTTGCAGATCTTCTAGCAGATCCTGATGTTGAGGGAATATATGAAACCAAGGTGCCACTGGAGTTTAACACTATAGTCCAGCTTGGTTGTGTATGTAAGGTGGACAAAACTGCTAAAAAACGTAGTCTACAAAAGCCATGGAATTTGAGTGAATTGCACATGAAGACCACAACAGAATGTGCTTACCTCGAACAATCTATATCCTTCTTTTACTTGTACCATAGCATCTCTGAGGGCCGGGCTATATATGTTGGATATTTTCCTGCATCAAAAGCAATAACTGTTGTGGTAGTTAATCCCTATCAAAACAAAGATTTATCACCAAATTTTCTTGAAAGACAATTCCATGCTGCTTGCCAAGCTTTGTCTATTGAGCCACCTCCAAGGAATGGCATTAATTTTAAGGTAAATCTGCAACTGTCTATTTACGTCTCTGTTTTCATGTTTATGGGTATCATTACATCCTACATTCAGGTGGACTATGTTGCACATGTCAAGGATGCTGAAACAGTGATGCAAAGTGCAATTAATTATCACAGGAGTGAACATCGTAAGCCCATGGTTGCTGTCATTGAATGTCCAAATGTTCAACTAGTAAAATTGGGCATTCCAGCTCTAGATAATTTTCCATGCCTGGGTATTCCTTCTAATGCACGTGATAGTCAGTATCAGATTCTTGGATGGCAACAAGTTGCTGCTAAAATTGGAATGCAACGTTGTGCTGCATCAGCCCAGTGGTTAAATGAGAGAATTGCTCTATCAAGATATGCCCATGTACCACTAGGAAACTTAGAACCTGACTGGCTTATATTTACAGCAGATACCTTCTTTTCAAGAGCATTGCATGATAATCAACAGGTTCTTTGGATATCTGATGATGGGCTTCCAGACTTGGGTGGCATTAATGGTGAAGAGAACTGTTTTGTCGACGAGGTCCACCAACCTGTTCTCACGTATCCTGGAGCTTATAGAAAAGTTACTGTGGAGCTAAAGATACACCACCTGGCTGTAGATGCTCTACTAAAATGCAACCAAGTTAACGAAATGGAAGGAGGTGCTTTGTTAGGATTAGATCATGAATTTGATTCTGAAGCATTTTCTGTGAATGGTCAGAATGGCTTTGATGAGTCTACTTCATGTGCACTCCCCTTTCGAGTCCTAAAACAGTTGATCCAGCGGTGCCTTGCTGATGCAGTTACATCTGGAAATGTTTATGCTGATGCAATATTGCAACATCTATATAGATGGCTTTGCAGCCCACAATCAAAACTTCATGATCCAGCTCTTCACCAACTACTTCACAAGGTCATGCAAAAGGTCTTCGCATTGTTGTTGGCAGAGTTTCGCAAGTTGGGTGCAACTATTGTATTTGCAAACTTTTCAAAGATTATTATTGACACAGGGAAATATGATCTGTCTGCAGCCAAAGCTTACTGTGATAGTTTGTTCAAAACTATACAATCTAGAGACCTATTTGAATGGATTGAGCTTGAACCACTGCAGTTCTGGTGCTCATTGCTATTCATGGACCAGTACAACTATGGTGGAATACCAGCAAAATCTGATGAAGCCATGAATGATGAATCTCAAGTTGACATCATATCAAGCTGGAATATTTCTGAGTACTTACCAAAAAAAATCCAGGACCATTTTGTTTTCATCGTATCTCAATTCATGTATATTCCTTGGAATTATACACAAAAACAAGCAGCAATCAGGGCTTCGTTGCTGAATGGTGACTCTTGCACTCCATCAATTAATATTGGAGCTGCAGAGGCTTTTGAATCAGAAATAACAGAATTTATTAAAGGGCAGATTAGCTCTTACTTTATAGAGAAACTGCTAGGAGTTGTTCGTGACATTGTTCTTCATATGAAGGAGATGATCAGATCAGAAAAAGACCAGAGTATATCATCCTGCCCTCCTCAACTCATGGGTGATCTCCATAGAGGGGATGCAGCCTTGGAATTTATCAAGCATGTCTGTGCTGTCCTGGCCCTCGACCAGAGTGTGCAGCATGATGTTTTGGTCATGAGAAAGAATTTGTTAAAATATGTTCGGGTGAGGGAGTTTGCTCCAGAAGCAGAGTTTCGTGATCCTTGTCATTCCTTCATCTTATCCAATGTCATCTGCAGCTATTGTAATGACTGCAGAGACTTGGACTTGTGTCGAGACTCGGCTTTATTGACTGAGGAGTGGCGTTGTGCCGTACCTCAGTGTGGCCAGCCTTATGACCGTGAGGTGATGGAGAATGCTCTTCTTCAGATTGTACGACAAAGGGAGCGGCTATACCACCTGCAAGATCTGGTGTGTCTCAGGTGCCACCAGGTGAAAGCTGCACATTTAGCTGAGCAATGTGCATGTGCAGGATCATTTAGGTGCAAGGAAGACGTAAGTGAATTCCGCACAAATATGCAGATTTTCTTGAACATAGCTTCTCGGCAGAAATTCCAGCTTCTTCAAGAATGTACCTCCTGGATTTTAGAACTTAGATTAGATAGTTAA 6729 0.407 MNGDGRRRDWIDSRISKKQKLILNAEEELEAKLGFNLFSEGNKRLGWLLTFSPSSFEDEETHKVYSCVDLYFVTQDGSTFKSKYRFRPYFYAATKDKMEMDVEAYLRRRYESQIANIEIIEKEDLDLKNHLSGLRKSYLKLSFDTVKHLMNVKSDLMHVVERNKAKSDAAQAYEAILTGRREQKPQDFLDCIIDLREYDVPYHVRFAIDNDIRSGQWYDVGVSNNGVTLEKRTDLLQRAEVRICAFDIETTKLPLKFPDAEYDLIMMISYMVDGQGYLIINRECVGEDIEDLEYTPKPEFEGYFKVTNVQNEIELLRLWFSHMQEVKPGIYVTYNGDFFDWPFMERRAAHHGFKMSDELGFQCDTNQGECRAKFACHLDCFAWVKRDSYLPQGSQGLKAVTKAKLGYDPLEVNPEDMVRFAKEKPQMMASYSVSDAVATYYLYTTYVHPFIFSLATIIPMSPDEVLRKGSGTLCEMLLMVQAYKANVICPNKHQSDPEKFYNNHLLESETYIGGHVECLESGVFRSDIPSSFTLEPSAYEQLISNLDRDLQYAIRVEGKMDLESVTNYDEVKNAITEKLVKLRDAPIRDECPLIYHLDVAAMYPNIILTNRLQPPSIVTDEICTACDFNRPGKTCLRKLEWVWRGETFMAKKSDYYHLKKQIESELVDGANERSSKSFLDLPKSEQQSRLRERLKKYCQKAYKRVLDKPVTELREAGICMRENPFYVDTVRSFRDRRYEYKGLNKVWKGKLAEAKASGNTIKIQEAQDMVVLYDSLQLAHKCILNSFYGYVMRKGARWYSMEMAGVVTYTGAKIIQNARLLVEKIGKPLELDTDGIWCALPGSFPENFTFKTKDSKRKLTISYPCVMLNVDVAINNTNDQYQTLADPIKKTYTIHSECSIEFEVDGPYKAMIIPASKEEGILIKKRYAVFNDDGTLAELKGFEIKRRGELKLIKVFQAELFDKFLHGSTLKECYSSVASVANRWLDLLDNQGKDIADSELLDYISESSTMSKSLADYGEQKSCAVTTARRLADFLGDTMVKDKGLRCQYIVASEPKGTPVSERAVPVAIFETDAEVMKFYVRKWCKVSSDVGIRSIVDWSYYKQRLSSAIQKIITIPAAMQKVANPVPRVAHPDWLHKKVREKEDKFRQRKLVDAFNSMNKNKKHNDSNGVRLVMDNETVNDLEDFGNKGRNSTCGPRPIIRQYEANNERHSMEPNGQDDLEQRHNDRGGMDQQLSPLQQNEISCENVDRTVDYQGWLQIKKRKWKVMLERRKKRRLVLRKSVDFFRLEKSDHLNGILEPLNGNIKQGRGNVSSYMISPEDYLTQYHWQIIQLVHSSQTGQISAWVIVAGFMCMIPVSVPRVFYLNSKSPITEFWVKRVNKTLPHGRPSYNLYEVVTPKVQNIEADKKLADLLADPDVEGIYETKVPLEFNTIVQLGCVCKVDKTAKKRSLQKPWNLSELHMKTTTECAYLEQSISFFYLYHSISEGRAIYVGYFPASKAITVVVVNPYQNKDLSPNFLERQFHAACQALSIEPPPRNGINFKVNLQLSIYVSVFMFMGIITSYIQVDYVAHVKDAETVMQSAINYHRSEHRKPMVAVIECPNVQLVKLGIPALDNFPCLGIPSNARDSQYQILGWQQVAAKIGMQRCAASAQWLNERIALSRYAHVPLGNLEPDWLIFTADTFFSRALHDNQQVLWISDDGLPDLGGINGEENCFVDEVHQPVLTYPGAYRKVTVELKIHHLAVDALLKCNQVNEMEGGALLGLDHEFDSEAFSVNGQNGFDESTSCALPFRVLKQLIQRCLADAVTSGNVYADAILQHLYRWLCSPQSKLHDPALHQLLHKVMQKVFALLLAEFRKLGATIVFANFSKIIIDTGKYDLSAAKAYCDSLFKTIQSRDLFEWIELEPLQFWCSLLFMDQYNYGGIPAKSDEAMNDESQVDIISSWNISEYLPKKIQDHFVFIVSQFMYIPWNYTQKQAAIRASLLNGDSCTPSINIGAAEAFESEITEFIKGQISSYFIEKLLGVVRDIVLHMKEMIRSEKDQSISSCPPQLMGDLHRGDAALEFIKHVCAVLALDQSVQHDVLVMRKNLLKYVRVREFAPEAEFRDPCHSFILSNVICSYCNDCRDLDLCRDSALLTEEWRCAVPQCGQPYDREVMENALLQIVRQRERLYHLQDLVCLRCHQVKAAHLAEQCACAGSFRCKEDVSEFRTNMQIFLNIASRQKFQLLQECTSWILELRLDS. 2243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca3g04098 2242 Gene3D DNA Polymerase, chain B, domain 1 57 228 - -
Seca3g04098 2242 FunFam DNA polymerase epsilon catalytic subunit 240 468 - -
Seca3g04098 2242 Gene3D - 941 1125 IPR042087 -
Seca3g04098 2242 MobiDBLite consensus disorder prediction 1206 1229 - -
Seca3g04098 2242 SMART DUF1744_2 1518 1925 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
Seca3g04098 2242 SUPERFAMILY DNA/RNA polymerases 469 1147 IPR043502 -
Seca3g04098 2242 SMART polmehr3 239 842 IPR006172 GO:0000166|GO:0003676|GO:0003887
Seca3g04098 2242 FunFam DNA polymerase epsilon catalytic subunit 754 937 - -
Seca3g04098 2242 FunFam DNA polymerase epsilon catalytic subunit 56 227 - -
Seca3g04098 2242 Pfam DNA polymerase family B 751 1064 IPR006134 GO:0000166|GO:0003677
Seca3g04098 2242 Pfam DNA polymerase family B, exonuclease domain 74 400 IPR006133 -
Seca3g04098 2242 PANTHER DNA POLYMERASE EPSILON CATALYTIC SUBUNIT A 16 2237 IPR029703 GO:0003677|GO:0003887|GO:0006260|GO:0006281|GO:0008622
Seca3g04098 2242 FunFam DNA polymerase epsilon catalytic subunit 941 1125 - -
Seca3g04098 2242 Gene3D Palm domain of DNA polymerase 750 937 IPR023211 -
Seca3g04098 2242 MobiDBLite consensus disorder prediction 1206 1230 - -
Seca3g04098 2242 SUPERFAMILY Ribonuclease H-like 60 467 IPR012337 -
Seca3g04098 2242 CDD DNA_polB_epsilon_exo 240 443 - -
Seca3g04098 2242 CDD POLBc_epsilon 503 1122 - -
Seca3g04098 2242 Gene3D - 238 468 IPR036397 GO:0003676
Seca3g04098 2242 Pfam Domain of unknown function (DUF1744) 1565 1925 IPR013697 GO:0003887|GO:0005634|GO:0006260|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca3g04098 Seca-Chr3 78336323 78363582 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca3g04098 5 2236 Core DNA Replication Machinery Family AT2G27120 66.890 0.0 3026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca3g04098 K02324 - gmx:100812003 3823.48